Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1771946..1772088 | Replicon | chromosome |
| Accession | NZ_CP068771 | ||
| Organism | Serratia plymuthica strain UBCF_13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1771990..1772086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1771946..1772088 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK621_RS08380 (JK621_08380) | 1767177..1767602 | + | 426 | WP_212559397.1 | TraR/DksA C4-type zinc finger protein | - |
| JK621_RS08385 (JK621_08385) | 1767762..1768715 | + | 954 | WP_212559398.1 | prolyl aminopeptidase | - |
| JK621_RS08390 (JK621_08390) | 1768746..1768976 | - | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| JK621_RS08395 (JK621_08395) | 1769351..1769863 | + | 513 | WP_212559399.1 | non-heme ferritin | - |
| JK621_RS08400 (JK621_08400) | 1770169..1770552 | + | 384 | WP_212559400.1 | CopC domain-containing protein YobA | - |
| JK621_RS08405 (JK621_08405) | 1770556..1771437 | + | 882 | WP_212559401.1 | copper homeostasis membrane protein CopD | - |
| JK621_RS08410 (JK621_08410) | 1771507..1771848 | + | 342 | WP_004943126.1 | YebY family protein | - |
| - | 1771946..1772088 | - | 143 | - | - | Antitoxin |
| - | 1771990..1772086 | + | 97 | - | - | Toxin |
| JK621_RS08415 (JK621_08415) | 1772153..1772317 | - | 165 | WP_249337156.1 | hypothetical protein | - |
| JK621_RS08420 (JK621_08420) | 1772517..1773392 | - | 876 | WP_212559402.1 | LysR family transcriptional regulator | - |
| JK621_RS08425 (JK621_08425) | 1773610..1774182 | + | 573 | WP_212559403.1 | isochorismatase family protein | - |
| JK621_RS08430 (JK621_08430) | 1774253..1774762 | + | 510 | WP_249337157.1 | NmrA family NAD(P)-binding protein | - |
| JK621_RS08435 (JK621_08435) | 1774722..1775261 | + | 540 | WP_212559404.1 | cysteine hydrolase family protein | - |
| JK621_RS08440 (JK621_08440) | 1775378..1775728 | + | 351 | WP_212559405.1 | DUF4377 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T187690 NZ_CP068771:1771990-1772086 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 143 bp
>AT187690 NZ_CP068771:c1772088-1771946 [Serratia plymuthica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
