Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1861531..1861802 | Replicon | chromosome |
| Accession | NZ_CP068706 | ||
| Organism | Escherichia coli strain J53-p1-pV-hybrid-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1861661..1861764 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1861531..1861802 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK375_RS08925 | 1858086..1858748 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JK375_RS08930 | 1858772..1859428 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JK375_RS08935 | 1859530..1859760 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JK375_RS08940 | 1859899..1860273 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JK375_RS08945 | 1860277..1861149 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JK375_RS08950 | 1861162..1861503 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1861531..1861802 | - | 272 | - | - | Antitoxin |
| - | 1861661..1861764 | + | 104 | - | - | Toxin |
| JK375_RS08955 | 1861899..1862555 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JK375_RS08960 | 1862556..1862747 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JK375_RS08965 | 1862852..1863088 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JK375_RS08970 | 1863206..1864645 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187632 NZ_CP068706:1861661-1861764 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187632 NZ_CP068706:c1861802-1861531 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
