Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3080257..3080528 | Replicon | chromosome |
| Accession | NZ_CP068680 | ||
| Organism | Escherichia coli strain NCCP12480 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3080387..3080490 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3080257..3080528 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKV47_RS14765 | 3076813..3077475 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JKV47_RS14770 | 3077499..3078155 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JKV47_RS14775 | 3078257..3078487 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JKV47_RS14780 | 3078626..3079000 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| JKV47_RS14785 | 3079004..3079876 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| JKV47_RS14790 | 3079889..3080230 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3080257..3080528 | - | 272 | - | - | Antitoxin |
| - | 3080387..3080490 | + | 104 | - | - | Toxin |
| JKV47_RS14795 | 3080625..3081281 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JKV47_RS14800 | 3081282..3081473 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JKV47_RS14805 | 3081578..3081814 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JKV47_RS14810 | 3081932..3083371 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187500 NZ_CP068680:3080387-3080490 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187500 NZ_CP068680:c3080528-3080257 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
