Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 1928305..1928852 | Replicon | chromosome |
| Accession | NZ_CP068638 | ||
| Organism | Vibrio parahaemolyticus strain VP120 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A2K7SRN5 |
| Locus tag | JHT21_RS09270 | Protein ID | WP_010448451.1 |
| Coordinates | 1928305..1928607 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U3A269 |
| Locus tag | JHT21_RS09275 | Protein ID | WP_005448240.1 |
| Coordinates | 1928595..1928852 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHT21_RS09230 (JHT21_09200) | 1923768..1923860 | - | 93 | WP_010448843.1 | DUF3265 domain-containing protein | - |
| JHT21_RS09235 (JHT21_09205) | 1923886..1924842 | - | 957 | WP_029807210.1 | hypothetical protein | - |
| JHT21_RS09240 (JHT21_09210) | 1925038..1925517 | - | 480 | WP_225868802.1 | hypothetical protein | - |
| JHT21_RS09245 (JHT21_09215) | 1925652..1926413 | - | 762 | WP_029807115.1 | hypothetical protein | - |
| JHT21_RS09250 (JHT21_09220) | 1926439..1926531 | - | 93 | WP_005494807.1 | DUF3265 domain-containing protein | - |
| JHT21_RS09255 (JHT21_09225) | 1927014..1927652 | - | 639 | WP_077345721.1 | hypothetical protein | - |
| JHT21_RS09260 (JHT21_09230) | 1927819..1928106 | - | 288 | WP_029807151.1 | hypothetical protein | - |
| JHT21_RS09265 (JHT21_09235) | 1928177..1928269 | - | 93 | WP_072612521.1 | DUF3265 domain-containing protein | - |
| JHT21_RS09270 (JHT21_09240) | 1928305..1928607 | - | 303 | WP_010448451.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JHT21_RS09275 (JHT21_09245) | 1928595..1928852 | - | 258 | WP_005448240.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| JHT21_RS09280 (JHT21_09250) | 1929043..1929408 | - | 366 | WP_029807180.1 | DUF6404 family protein | - |
| JHT21_RS09285 | 1929517..1929612 | - | 96 | Protein_1802 | hypothetical protein | - |
| JHT21_RS09290 (JHT21_09260) | 1929584..1929895 | - | 312 | WP_017420651.1 | antibiotic biosynthesis monooxygenase | - |
| JHT21_RS09295 | 1929932..1930061 | - | 130 | Protein_1804 | DUF3265 domain-containing protein | - |
| JHT21_RS09300 (JHT21_09265) | 1930558..1931187 | - | 630 | WP_029807123.1 | hypothetical protein | - |
| JHT21_RS09310 (JHT21_09275) | 1931327..1931938 | - | 612 | WP_029807124.1 | hypothetical protein | - |
| JHT21_RS09315 (JHT21_09280) | 1931969..1932058 | - | 90 | WP_072829120.1 | DUF3265 domain-containing protein | - |
| JHT21_RS09320 (JHT21_09285) | 1932579..1932671 | - | 93 | WP_077345722.1 | DUF3265 domain-containing protein | - |
| JHT21_RS09325 (JHT21_09290) | 1932797..1933369 | - | 573 | WP_025639178.1 | hypothetical protein | - |
| JHT21_RS09330 (JHT21_09295) | 1933399..1933491 | - | 93 | Protein_1810 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integron | - | - | 1862372..1938275 | 75903 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11625.52 Da Isoelectric Point: 5.1765
>T187469 WP_010448451.1 NZ_CP068638:c1928607-1928305 [Vibrio parahaemolyticus]
MAEVIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLGKQ
MAEVIWTEPALSDLNDIAEYIALENIVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLGKQ
Download Length: 303 bp
>T187469 NZ_CP089849:1931221-1931511 [Pseudomonas aeruginosa]
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
TTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCCCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCTACATTGAAAACCATGCTGGCA
GTAATGCGAGCTCTGGGAGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
TTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCCCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCTACATTGAAAACCATGCTGGCA
GTAATGCGAGCTCTGGGAGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9606.10 Da Isoelectric Point: 6.7269
>AT187469 WP_005448240.1 NZ_CP068638:c1928852-1928595 [Vibrio parahaemolyticus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT187469 NZ_CP089849:1930925-1931224 [Pseudomonas aeruginosa]
ATGGTCGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA
ATGGTCGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2K7SRN5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A432DGX8 |