Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1834387..1834915 | Replicon | chromosome |
| Accession | NZ_CP068638 | ||
| Organism | Vibrio parahaemolyticus strain VP120 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | K5TRR0 |
| Locus tag | JHT21_RS08315 | Protein ID | WP_005377002.1 |
| Coordinates | 1834625..1834915 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR02 |
| Locus tag | JHT21_RS08310 | Protein ID | WP_005377003.1 |
| Coordinates | 1834387..1834635 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHT21_RS08270 | 1830186..1830374 | - | 189 | WP_021823297.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| JHT21_RS08280 (JHT21_08270) | 1832182..1832472 | - | 291 | WP_005500341.1 | YkgJ family cysteine cluster protein | - |
| JHT21_RS08285 (JHT21_08275) | 1832739..1833023 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| JHT21_RS08290 (JHT21_08280) | 1833020..1833298 | + | 279 | WP_005500338.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| JHT21_RS08295 (JHT21_08285) | 1833327..1833416 | - | 90 | WP_072828858.1 | DUF3265 domain-containing protein | - |
| JHT21_RS08300 (JHT21_08290) | 1833434..1833787 | - | 354 | WP_017449619.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| JHT21_RS08305 (JHT21_08295) | 1834244..1834312 | - | 69 | WP_074531725.1 | DUF3265 domain-containing protein | - |
| JHT21_RS08310 (JHT21_08300) | 1834387..1834635 | + | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| JHT21_RS08315 (JHT21_08305) | 1834625..1834915 | + | 291 | WP_005377002.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JHT21_RS08320 (JHT21_08310) | 1835054..1835413 | - | 360 | WP_029806843.1 | hypothetical protein | - |
| JHT21_RS08325 (JHT21_08315) | 1835569..1835952 | - | 384 | WP_029806841.1 | hypothetical protein | - |
| JHT21_RS08330 (JHT21_08320) | 1836108..1836650 | - | 543 | WP_029806840.1 | SEC-C metal-binding domain-containing protein | - |
| JHT21_RS08335 (JHT21_08325) | 1836725..1836835 | - | 111 | WP_077345731.1 | DUF3265 domain-containing protein | - |
| JHT21_RS08340 (JHT21_08330) | 1837119..1837208 | - | 90 | WP_077345730.1 | DUF3265 domain-containing protein | - |
| JHT21_RS08345 (JHT21_08335) | 1837231..1837572 | - | 342 | WP_029807300.1 | hypothetical protein | - |
| JHT21_RS08350 | 1837769..1837957 | - | 189 | Protein_1616 | hypothetical protein | - |
| JHT21_RS08355 (JHT21_08340) | 1838184..1838696 | - | 513 | WP_029807290.1 | hypothetical protein | - |
| JHT21_RS08360 (JHT21_08345) | 1839210..1839338 | - | 129 | WP_077345729.1 | DUF3265 domain-containing protein | - |
| JHT21_RS08365 | 1839746..1839874 | - | 129 | WP_089184017.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | vpadF | 1787820..1874336 | 86516 | |
| - | inside | Integron | - | - | 1829868..1852111 | 22243 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11261.25 Da Isoelectric Point: 10.5932
>T187468 WP_005377002.1 NZ_CP068638:1834625-1834915 [Vibrio parahaemolyticus]
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
Download Length: 291 bp
>T187468 NZ_CP089849:1930925-1931224 [Pseudomonas aeruginosa]
ATGGTCGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA
ATGGTCGAAGTCAAACAAACCGCCACTTTCATGGCATGGGAAAGCAAGCTAAAGGATCGGCGGGCAAAGGCCGTGATCGC
CGCCCGTATCTTCCGATTGGCGAATGGACTACCCGGCGATGTGTCACCAGTCGGCCAGGGTGTGAGCGAGTTGAGGATTC
ACTATGGCCCAGGCTATCGGGTGTACTTCCAGCAGCGCGGGACGGAAATCGTCATCCTGCTATGTGGTGGAGACAAGAGC
AGCCAGGCCAGGGATATAGAAATGGCGAAACGCCTGGCAAATGAGTGGAGGCCGCAATGA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9079.37 Da Isoelectric Point: 3.9610
>AT187468 WP_005377003.1 NZ_CP068638:1834387-1834635 [Vibrio parahaemolyticus]
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
Download Length: 249 bp
>AT187468 NZ_CP089849:1931221-1931511 [Pseudomonas aeruginosa]
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
TTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCCCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCTACATTGAAAACCATGCTGGCA
GTAATGCGAGCTCTGGGAGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA
ATGACCGAGCAAATTTATGATTATGACCCCGCGCAAGCGCTGGACAGCCCGGAGGCCATGGCTCTGTTCATCGCAGACGC
TTTGGATACTGGAGACACCGCCTATATCGCTAAGGCTATGGGAGTCGTGGCCCGCGCCAAGGGGATGACGGAGTTGGCCA
AGGAAACGGGTTTGGCCAGGGAGCAGCTTTACAAATCGTTTAGTGAGCGCGGGAACCCTACATTGAAAACCATGCTGGCA
GTAATGCGAGCTCTGGGAGTTGATCTGACCGCCCGCCCGCATGCTCAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR03 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR02 |