Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1832739..1833298 | Replicon | chromosome |
| Accession | NZ_CP068631 | ||
| Organism | Vibrio parahaemolyticus strain TJ-20 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | A0A249W573 |
| Locus tag | JHT10_RS16435 | Protein ID | WP_005500338.1 |
| Coordinates | 1833020..1833298 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR21 |
| Locus tag | JHT10_RS16430 | Protein ID | WP_005398409.1 |
| Coordinates | 1832739..1833023 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHT10_RS16405 (JHT10_16385) | 1828384..1828845 | - | 462 | WP_005500350.1 | hypothetical protein | - |
| JHT10_RS16410 (JHT10_16390) | 1829187..1829633 | + | 447 | WP_021449154.1 | DUF3291 domain-containing protein | - |
| JHT10_RS16415 | 1830186..1830374 | - | 189 | WP_021823297.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| JHT10_RS16425 (JHT10_16405) | 1832182..1832472 | - | 291 | WP_005500341.1 | YkgJ family cysteine cluster protein | - |
| JHT10_RS16430 (JHT10_16410) | 1832739..1833023 | + | 285 | WP_005398409.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| JHT10_RS16435 (JHT10_16415) | 1833020..1833298 | + | 279 | WP_005500338.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| JHT10_RS16440 (JHT10_16420) | 1833327..1833416 | - | 90 | WP_072828858.1 | DUF3265 domain-containing protein | - |
| JHT10_RS16445 (JHT10_16425) | 1833434..1833787 | - | 354 | WP_017449619.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| JHT10_RS16450 (JHT10_16430) | 1834244..1834312 | - | 69 | WP_074531725.1 | DUF3265 domain-containing protein | - |
| JHT10_RS16455 (JHT10_16435) | 1834387..1834635 | + | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| JHT10_RS16460 (JHT10_16440) | 1834625..1834915 | + | 291 | WP_005377002.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JHT10_RS16465 (JHT10_16445) | 1835054..1835413 | - | 360 | WP_029806843.1 | hypothetical protein | - |
| JHT10_RS16470 (JHT10_16450) | 1835569..1835952 | - | 384 | WP_029806841.1 | hypothetical protein | - |
| JHT10_RS16475 (JHT10_16455) | 1836108..1836650 | - | 543 | WP_029806840.1 | SEC-C metal-binding domain-containing protein | - |
| JHT10_RS16480 (JHT10_16460) | 1836725..1836835 | - | 111 | WP_077345731.1 | DUF3265 domain-containing protein | - |
| JHT10_RS16485 (JHT10_16465) | 1837119..1837208 | - | 90 | WP_077345730.1 | DUF3265 domain-containing protein | - |
| JHT10_RS16490 (JHT10_16470) | 1837231..1837572 | - | 342 | WP_029807300.1 | hypothetical protein | - |
| JHT10_RS16495 | 1837769..1837957 | - | 189 | Protein_1616 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | vpadF | 1787820..1874336 | 86516 | |
| - | inside | Integron | - | - | 1829868..1852111 | 22243 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10878.53 Da Isoelectric Point: 4.2597
>T187460 WP_005500338.1 NZ_CP068631:1833020-1833298 [Vibrio parahaemolyticus]
MILWEEESLDDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPDISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLDDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDGIRGRLLIIPDISMIVSYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T187460 NZ_CP089848:2401560-2401838 [Paralcaligenes sp. KSB-10]
ATGATCAAGAGCTTTCGGCACAAAGGCCTTCGTCGGCTGTTCGAGACTGGCAACGCATCCGGCGTTCAAGTAAGCCATGC
CAAACGCCTTCGTCTACAACTGTCCGCCCTTGATACCGCTCAGGTTATCGAAGACATGGACATCCCAGGATTTAGGCTCC
ATCCCCTCAAAGGCTCAATGAAAGACCGCTGGTCAATCACCGTCAACGGAAACTGGCGTATCACCTTTGAGTTTGAAGAC
GGAAACGCCTATGTGCTGGACTATGAGGACTATCACTGA
ATGATCAAGAGCTTTCGGCACAAAGGCCTTCGTCGGCTGTTCGAGACTGGCAACGCATCCGGCGTTCAAGTAAGCCATGC
CAAACGCCTTCGTCTACAACTGTCCGCCCTTGATACCGCTCAGGTTATCGAAGACATGGACATCCCAGGATTTAGGCTCC
ATCCCCTCAAAGGCTCAATGAAAGACCGCTGGTCAATCACCGTCAACGGAAACTGGCGTATCACCTTTGAGTTTGAAGAC
GGAAACGCCTATGTGCTGGACTATGAGGACTATCACTGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11069.40 Da Isoelectric Point: 9.2167
>AT187460 WP_005398409.1 NZ_CP068631:1832739-1833023 [Vibrio parahaemolyticus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFVEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT187460 NZ_CP089848:2401838-2402131 [Paralcaligenes sp. KSB-10]
ATGAACATGCACAATCCACCCCACCCCGGTGAATTTATCTCTGGCATCTACCTTGAGCCCAACAATATCAGCGGGCGCGA
ACTTGCTCAAGCACTTGGCGTAGCCGCCTCTACCCTCAGCCGAGTACTCAACGGCACTTCTCGTGTGACGCCCGAAATGG
CGCTTCGCCTTTCCAAGTCACTTGGGCGCAGCCCGGAAAGCTGGCTGACTATGCAGGACGCTTACGACTTGTGGCTCGCT
CGCCAGCACGTTAATTTGCAAGGTGTCGGCAAACTCCAATTCGCCGGAGCCTAG
ATGAACATGCACAATCCACCCCACCCCGGTGAATTTATCTCTGGCATCTACCTTGAGCCCAACAATATCAGCGGGCGCGA
ACTTGCTCAAGCACTTGGCGTAGCCGCCTCTACCCTCAGCCGAGTACTCAACGGCACTTCTCGTGTGACGCCCGAAATGG
CGCTTCGCCTTTCCAAGTCACTTGGGCGCAGCCCGGAAAGCTGGCTGACTATGCAGGACGCTTACGACTTGTGGCTCGCT
CGCCAGCACGTTAATTTGCAAGGTGTCGGCAAACTCCAATTCGCCGGAGCCTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A249W573 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UR21 |