Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1328779..1329307 | Replicon | chromosome |
| Accession | NZ_CP068627 | ||
| Organism | Vibrio parahaemolyticus strain LH80 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | JHS95_RS06445 | Protein ID | WP_038208214.1 |
| Coordinates | 1328779..1329069 (-) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR02 |
| Locus tag | JHS95_RS06450 | Protein ID | WP_005377003.1 |
| Coordinates | 1329059..1329307 (-) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHS95_RS06425 (JHS95_06390) | 1324412..1325134 | + | 723 | WP_140250825.1 | hypothetical protein | - |
| JHS95_RS06430 | 1325112..1325249 | + | 138 | WP_237302033.1 | DUF3265 domain-containing protein | - |
| JHS95_RS06435 (JHS95_06395) | 1325828..1326460 | + | 633 | WP_237302034.1 | hypothetical protein | - |
| JHS95_RS06440 (JHS95_06400) | 1326609..1327034 | + | 426 | WP_025507144.1 | hypothetical protein | - |
| JHS95_RS06445 (JHS95_06405) | 1328779..1329069 | - | 291 | WP_038208214.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| JHS95_RS06450 (JHS95_06410) | 1329059..1329307 | - | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| JHS95_RS06455 (JHS95_06415) | 1329382..1329450 | + | 69 | WP_074531725.1 | DUF3265 domain-containing protein | - |
| JHS95_RS06460 (JHS95_06420) | 1329500..1330186 | + | 687 | WP_140265738.1 | DUF4336 domain-containing protein | - |
| JHS95_RS06465 (JHS95_06425) | 1330359..1330985 | + | 627 | WP_237302035.1 | LysE family translocator | - |
| JHS95_RS06470 (JHS95_06430) | 1330991..1331104 | + | 114 | WP_237302036.1 | DUF3265 domain-containing protein | - |
| JHS95_RS06475 (JHS95_06435) | 1331739..1331996 | + | 258 | WP_237302037.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| JHS95_RS06480 (JHS95_06440) | 1331984..1332286 | + | 303 | WP_237302038.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JHS95_RS06485 (JHS95_06445) | 1332325..1332414 | + | 90 | WP_086375053.1 | DUF3265 domain-containing protein | - |
| JHS95_RS06490 (JHS95_06450) | 1332494..1332880 | + | 387 | WP_272910821.1 | GFA family protein | - |
| JHS95_RS06495 (JHS95_06455) | 1333043..1333681 | + | 639 | WP_237302039.1 | hypothetical protein | - |
| JHS95_RS06500 | 1333647..1333793 | + | 147 | WP_237302040.1 | DUF3265 domain-containing protein | - |
| JHS95_RS06505 (JHS95_06460) | 1333822..1334175 | + | 354 | WP_023623407.1 | hypothetical protein | - |
| JHS95_RS06510 (JHS95_06465) | 1334205..1334297 | + | 93 | WP_071652176.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | vpadF / vxsC / virG / exsA / exsD / vscB / vscC / vscD / vscF / vscG / vscH / vscI / vscJ / vscK / vscL / vopS / vopR / vecA / vopQ / vscU / vscT / vscS / vscR / vscQ / vscP / vscO / vscN / vopN / tyeA/vcr1 / sycN/vcr2 / vscX / vscY / vcrD / vcrR / vcrG / vcrV / vcrH / vopB / vopD / VP1611 | 1205963..1697998 | 492035 | |
| - | inside | Integron | - | - | 1282479..1430131 | 147652 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11289.26 Da Isoelectric Point: 10.6284
>T187453 WP_038208214.1 NZ_CP068627:c1329069-1328779 [Vibrio parahaemolyticus]
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASRLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASRLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
Download Length: 291 bp
>T187453 NZ_CP089799:3418871-3419089 [Salmonella enterica subsp. enterica serovar Kentucky]
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
ATGTCTGATAAACCATTAACTAAAACTGATTATTTGATGCGTTTACGGCGCTGTCAGACAATTGACACTCTGGAGCGCGT
CATTGAGAAAAATAAATATGAATTGTCCGACAATGAGCTGGCTGTATTTTACTCAGCTGCGGATCACCGTCTTGCAGAAT
TGACGATGAACAAACTCTACGACAAGATCCCCTCTTCAGTATGGAAATTCATTCGTTAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9079.37 Da Isoelectric Point: 3.9610
>AT187453 WP_005377003.1 NZ_CP068627:c1329307-1329059 [Vibrio parahaemolyticus]
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLAIAKERESEESISVNID
DL
Download Length: 249 bp
>AT187453 NZ_CP089799:3418469-3418843 [Salmonella enterica subsp. enterica serovar Kentucky]
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCTAATCCTGTTAGTTTGTCTTGTTAA
ATGGACGAATACTCACCCAAAAGACATGATATAGCACAGCTTAAATTTCTTTGCGAAACCCTGTATCATGACTGTCTTGC
AAACCTTGAAGAAAGCAACCATGGCTGGGTTAATGACCCGACCTCAGCAGTCAACCTGCAGCTCAATGAGCTGATAGAGC
ATATTGCAACTTTCGCGCTTAATTATAAAATTAAGTACAATGAAGACAATAAATTGATTGCGCAGATAGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTATGGTATTAATACGCAGGATTTGCAAAAATGGCGTAAATCGGGCAACCGCCT
GTTCCGTTGTTTCGTCAACGCCACCAGGGCTAATCCTGTTAGTTTGTCTTGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|