Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910493..1910638 | Replicon | chromosome |
| Accession | NZ_CP068618 | ||
| Organism | Klebsiella pneumoniae strain 41968 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910529..1910631 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910493..1910638 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMZ79_RS09320 | 1905623..1907683 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| JMZ79_RS09325 | 1907687..1908346 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMZ79_RS09330 | 1908425..1908655 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMZ79_RS09335 | 1908768..1909142 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMZ79_RS09340 | 1909146..1910015 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| JMZ79_RS09345 | 1910032..1910370 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1910493..1910638 | - | 146 | - | - | Antitoxin |
| - | 1910529..1910631 | + | 103 | - | - | Toxin |
| JMZ79_RS09350 | 1911006..1911149 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMZ79_RS09355 | 1911254..1912222 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMZ79_RS09360 | 1912379..1913032 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| JMZ79_RS09365 | 1913029..1913220 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMZ79_RS09370 | 1913318..1913557 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMZ79_RS09375 | 1913673..1915106 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187432 NZ_CP068618:1910529-1910631 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT187432 NZ_CP068618:c1910638-1910493 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
