Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1974731..1974876 | Replicon | chromosome |
| Accession | NZ_CP068602 | ||
| Organism | Klebsiella pneumoniae strain 59493 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1974767..1974869 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1974731..1974876 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMZ77_RS09560 | 1969861..1971921 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| JMZ77_RS09565 | 1971925..1972584 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JMZ77_RS09570 | 1972663..1972893 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JMZ77_RS09575 | 1973006..1973380 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JMZ77_RS09580 | 1973384..1974253 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| JMZ77_RS09585 | 1974270..1974608 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1974731..1974876 | - | 146 | - | - | Antitoxin |
| - | 1974767..1974869 | + | 103 | - | - | Toxin |
| JMZ77_RS09590 | 1975244..1975387 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JMZ77_RS09595 | 1975492..1976460 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JMZ77_RS09600 | 1976617..1977270 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| JMZ77_RS09605 | 1977267..1977458 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JMZ77_RS09610 | 1977556..1977795 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JMZ77_RS09615 | 1977911..1979344 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187372 NZ_CP068602:1974767-1974869 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT187372 NZ_CP068602:c1974876-1974731 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
