Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2840661..2840932 | Replicon | chromosome |
| Accession | NZ_CP068591 | ||
| Organism | Escherichia coli strain EF7-18-58 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2840699..2840802 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2840661..2840932 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMY44_RS13480 | 2837818..2839257 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JMY44_RS13485 | 2839375..2839611 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JMY44_RS13490 | 2839716..2839907 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JMY44_RS13495 | 2839908..2840564 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2840661..2840932 | + | 272 | - | - | Antitoxin |
| - | 2840699..2840802 | - | 104 | - | - | Toxin |
| JMY44_RS13500 | 2840960..2841301 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JMY44_RS13505 | 2841314..2842186 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| JMY44_RS13510 | 2842190..2842564 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JMY44_RS13515 | 2842703..2842933 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JMY44_RS13520 | 2843035..2843691 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| JMY44_RS13525 | 2843715..2844377 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187348 NZ_CP068591:c2840802-2840699 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187348 NZ_CP068591:2840661-2840932 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
