Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3205548..3205693 | Replicon | chromosome |
| Accession | NZ_CP068572 | ||
| Organism | Klebsiella pneumoniae strain IR1251 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3205555..3205657 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3205548..3205693 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJV77_RS15845 | 3201080..3202513 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJV77_RS15850 | 3202629..3202868 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JJV77_RS15855 | 3202966..3203157 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JJV77_RS15860 | 3203154..3203807 | - | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| JJV77_RS15865 | 3203964..3204932 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JJV77_RS15870 | 3205037..3205180 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3205548..3205693 | + | 146 | - | - | Antitoxin |
| - | 3205555..3205657 | - | 103 | - | - | Toxin |
| JJV77_RS15875 | 3205816..3206154 | - | 339 | WP_016529031.1 | YebY family protein | - |
| JJV77_RS15880 | 3206171..3207040 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JJV77_RS15885 | 3207044..3207418 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JJV77_RS15890 | 3207531..3207761 | + | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
| JJV77_RS15895 | 3207840..3208499 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JJV77_RS15900 | 3208503..3210563 | - | 2061 | WP_206925937.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187308 NZ_CP068572:c3205657-3205555 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT187308 NZ_CP068572:3205548-3205693 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
