Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1914020..1914162 | Replicon | chromosome |
| Accession | NZ_CP068444 | ||
| Organism | Klebsiella quasipneumoniae strain SWMUF35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1914056..1914158 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1914020..1914162 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IT777_RS09280 | 1909150..1911210 | + | 2061 | WP_044523975.1 | oligopeptidase B | - |
| IT777_RS09285 | 1911214..1911873 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| IT777_RS09290 | 1911952..1912182 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IT777_RS09295 | 1912295..1912669 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| IT777_RS09300 | 1912673..1913542 | + | 870 | WP_101995793.1 | copper homeostasis membrane protein CopD | - |
| IT777_RS09305 | 1913559..1913897 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1914020..1914162 | - | 143 | - | - | Antitoxin |
| - | 1914056..1914158 | + | 103 | - | - | Toxin |
| IT777_RS09310 | 1914537..1914680 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| IT777_RS09315 | 1914784..1915752 | - | 969 | WP_167878524.1 | VirK/YbjX family protein | - |
| IT777_RS09320 | 1915909..1916562 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| IT777_RS09325 | 1916559..1916750 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IT777_RS09330 | 1916848..1917087 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IT777_RS09335 | 1917203..1918633 | - | 1431 | WP_135732550.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187242 NZ_CP068444:1914056-1914158 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT187242 NZ_CP068444:c1914162-1914020 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
