Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1906101..1906369 | Replicon | chromosome |
| Accession | NZ_CP068394 | ||
| Organism | Escherichia coli strain M-17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1906139..1906241 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1906101..1906369 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JK368_RS09390 | 1903258..1904697 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JK368_RS09395 | 1904815..1905051 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JK368_RS09400 | 1905156..1905347 | + | 192 | WP_001317886.1 | YebW family protein | - |
| JK368_RS09405 | 1905348..1906004 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
| - | 1906101..1906369 | + | 269 | - | - | Antitoxin |
| - | 1906139..1906241 | - | 103 | - | - | Toxin |
| JK368_RS09410 | 1906399..1906740 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JK368_RS09415 | 1906753..1907625 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| JK368_RS09420 | 1907629..1908003 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JK368_RS09425 | 1908142..1908372 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JK368_RS09430 | 1908474..1909130 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| JK368_RS09435 | 1909153..1909815 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T187195 NZ_CP068394:c1906241-1906139 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT187195 NZ_CP068394:1906101-1906369 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
