Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1960417..1960688 | Replicon | chromosome |
| Accession | NZ_CP068283 | ||
| Organism | Escherichia coli strain CY598 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1960455..1960558 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1960417..1960688 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI738_RS09760 | 1957574..1959013 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JI738_RS09765 | 1959131..1959367 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JI738_RS09770 | 1959472..1959663 | + | 192 | WP_000457842.1 | YebW family protein | - |
| JI738_RS09775 | 1959664..1960320 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1960417..1960688 | + | 272 | - | - | Antitoxin |
| - | 1960455..1960558 | - | 104 | - | - | Toxin |
| JI738_RS09780 | 1960716..1961057 | - | 342 | WP_000976476.1 | YebY family protein | - |
| JI738_RS09785 | 1961070..1961942 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JI738_RS09790 | 1961946..1962320 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JI738_RS09795 | 1962459..1962689 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JI738_RS09800 | 1962791..1963447 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JI738_RS09805 | 1963471..1964133 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187097 NZ_CP068283:c1960558-1960455 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187097 NZ_CP068283:1960417-1960688 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
