Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3168902..3169173 | Replicon | chromosome |
| Accession | NZ_CP068281 | ||
| Organism | Escherichia coli strain CY706 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3168940..3169043 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3168902..3169173 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW04_RS15510 | 3166059..3167498 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJW04_RS15515 | 3167616..3167852 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JJW04_RS15520 | 3167957..3168148 | + | 192 | WP_000457842.1 | YebW family protein | - |
| JJW04_RS15525 | 3168149..3168805 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3168902..3169173 | + | 272 | - | - | Antitoxin |
| - | 3168940..3169043 | - | 104 | - | - | Toxin |
| JJW04_RS15530 | 3169201..3169542 | - | 342 | WP_000976476.1 | YebY family protein | - |
| JJW04_RS15535 | 3169555..3170427 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JJW04_RS15540 | 3170431..3170805 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JJW04_RS15545 | 3170944..3171174 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJW04_RS15550 | 3171276..3171932 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJW04_RS15555 | 3171956..3172618 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187059 NZ_CP068281:c3169043-3168940 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187059 NZ_CP068281:3168902-3169173 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
