Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3073845..3074116 | Replicon | chromosome |
| Accession | NZ_CP068279 | ||
| Organism | Escherichia coli strain CY708 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3073883..3073986 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3073845..3074116 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJW05_RS15015 | 3071002..3072441 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJW05_RS15020 | 3072559..3072795 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JJW05_RS15025 | 3072900..3073091 | + | 192 | WP_000457842.1 | YebW family protein | - |
| JJW05_RS15030 | 3073092..3073748 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3073845..3074116 | + | 272 | - | - | Antitoxin |
| - | 3073883..3073986 | - | 104 | - | - | Toxin |
| JJW05_RS15035 | 3074144..3074485 | - | 342 | WP_000976476.1 | YebY family protein | - |
| JJW05_RS15040 | 3074498..3075370 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JJW05_RS15045 | 3075374..3075748 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JJW05_RS15050 | 3075887..3076117 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJW05_RS15055 | 3076219..3076875 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJW05_RS15060 | 3076899..3077561 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T187012 NZ_CP068279:c3073986-3073883 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT187012 NZ_CP068279:3073845-3074116 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
