Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1967950..1968100 | Replicon | chromosome |
| Accession | NZ_CP068237 | ||
| Organism | Klebsiella quasipneumoniae strain YDKL-002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1967991..1968093 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1967950..1968100 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJQ56_RS09520 | 1963085..1965145 | + | 2061 | WP_202025076.1 | oligopeptidase B | - |
| JJQ56_RS09525 | 1965149..1965808 | - | 660 | WP_153677748.1 | exodeoxyribonuclease X | - |
| JJQ56_RS09530 | 1965887..1966117 | - | 231 | WP_153678089.1 | DNA polymerase III subunit theta | - |
| JJQ56_RS09535 | 1966230..1966604 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| JJQ56_RS09540 | 1966608..1967477 | + | 870 | WP_202025077.1 | copper homeostasis membrane protein CopD | - |
| JJQ56_RS09545 | 1967494..1967832 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1967950..1968100 | - | 151 | - | - | Antitoxin |
| - | 1967991..1968093 | + | 103 | - | - | Toxin |
| JJQ56_RS09550 | 1968472..1968615 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| JJQ56_RS09555 | 1968719..1969687 | - | 969 | WP_202025078.1 | VirK/YbjX family protein | - |
| JJQ56_RS09560 | 1969844..1970497 | + | 654 | WP_202025079.1 | protein-serine/threonine phosphatase | - |
| JJQ56_RS09565 | 1970494..1970685 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JJQ56_RS09570 | 1970783..1971022 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JJQ56_RS09575 | 1971138..1972571 | - | 1434 | WP_202025080.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T186921 NZ_CP068237:1967991-1968093 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT186921 NZ_CP068237:c1968100-1967950 [Klebsiella quasipneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
