Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2922289..2922459 | Replicon | chromosome |
| Accession | NZ_CP068234 | ||
| Organism | Leclercia adecarboxylata strain YZ30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2922291..2922393 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2922289..2922459 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJN11_RS14125 (JJN11_14060) | 2919430..2920545 | + | 1116 | WP_156654749.1 | RecT family recombinase | - |
| JJN11_RS14130 (JJN11_14065) | 2920583..2920822 | + | 240 | WP_156654750.1 | DUF4060 family protein | - |
| JJN11_RS14135 (JJN11_14070) | 2920887..2921159 | + | 273 | WP_032611896.1 | excisionase | - |
| JJN11_RS14140 (JJN11_14075) | 2921128..2922213 | + | 1086 | WP_156654751.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2922289..2922459 | + | 171 | - | - | Antitoxin |
| - | 2922291..2922393 | - | 103 | - | - | Toxin |
| JJN11_RS14145 (JJN11_14080) | 2922534..2922872 | - | 339 | WP_103180045.1 | YebY family protein | - |
| JJN11_RS14150 (JJN11_14085) | 2922887..2923759 | - | 873 | WP_156654752.1 | copper homeostasis membrane protein CopD | - |
| JJN11_RS14155 (JJN11_14090) | 2923761..2924126 | - | 366 | WP_103180047.1 | CopC domain-containing protein YobA | - |
| JJN11_RS14160 (JJN11_14095) | 2924263..2924493 | + | 231 | WP_103180048.1 | DNA polymerase III subunit theta | - |
| JJN11_RS14165 (JJN11_14100) | 2924601..2925257 | + | 657 | WP_103181103.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| JJN11_RS14170 (JJN11_14105) | 2925282..2925944 | + | 663 | WP_103180049.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T186909 NZ_CP068234:c2922393-2922291 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 171 bp
>AT186909 NZ_CP068234:2922289-2922459 [Leclercia adecarboxylata]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTG
AAAAAAAGCGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTG
AAAAAAAGCGT
