Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202261..2202462 | Replicon | chromosome |
| Accession | NZ_CP068215 | ||
| Organism | Enterobacter hormaechei strain FDAARGOS_1078 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202266..2202369 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202261..2202462 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I35_RS10595 | 2198522..2199970 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| I6I35_RS10600 | 2200076..2200315 | + | 240 | WP_003859885.1 | YebV family protein | - |
| I6I35_RS10605 | 2200350..2200994 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| I6I35_RS10610 | 2201162..2202142 | + | 981 | WP_032653972.1 | VirK/YbjX family protein | - |
| I6I35_RS10615 | 2202188..2202385 | + | 198 | WP_032653975.1 | hypothetical protein | - |
| - | 2202261..2202462 | + | 202 | - | - | Antitoxin |
| - | 2202266..2202369 | - | 104 | - | - | Toxin |
| I6I35_RS10620 | 2202511..2202849 | - | 339 | WP_003859787.1 | YebY family protein | - |
| I6I35_RS10625 | 2202866..2203735 | - | 870 | WP_032653979.1 | copper homeostasis membrane protein CopD | - |
| I6I35_RS10630 | 2203737..2204108 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| I6I35_RS10635 | 2204246..2204476 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| I6I35_RS10640 | 2204588..2205238 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| I6I35_RS10645 | 2205263..2205925 | + | 663 | WP_032653982.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186861 NZ_CP068215:c2202369-2202266 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT186861 NZ_CP068215:2202261-2202462 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
