Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4268290..4268408 | Replicon | chromosome |
| Accession | NZ_CP068147 | ||
| Organism | Yersinia enterocolitica strain FDAARGOS_1090 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4268292..4268386 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4268290..4268408 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I47_RS19295 | 4263893..4265110 | + | 1218 | WP_049530458.1 | phage tail tape measure protein | - |
| I6I47_RS19300 | 4265113..4265565 | + | 453 | WP_020283096.1 | phage tail protein | - |
| I6I47_RS19305 | 4265562..4266704 | + | 1143 | WP_020283095.1 | phage late control D family protein | - |
| I6I47_RS19310 | 4266797..4267015 | + | 219 | WP_020283094.1 | DNA-binding transcriptional regulator | - |
| I6I47_RS19315 | 4267164..4268234 | + | 1071 | WP_023160044.1 | tyrosine-type recombinase/integrase | - |
| - | 4268290..4268408 | + | 119 | - | - | Antitoxin |
| - | 4268292..4268386 | - | 95 | - | - | Toxin |
| I6I47_RS19320 | 4268561..4268902 | - | 342 | WP_005163587.1 | YebY family protein | - |
| I6I47_RS19325 | 4268999..4269883 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| I6I47_RS19330 | 4269885..4270271 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| I6I47_RS19335 | 4270664..4271173 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| I6I47_RS19340 | 4271557..4271790 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| I6I47_RS19345 | 4271840..4272796 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4253803..4273968 | 20165 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T186730 NZ_CP068147:c4268386-4268292 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT186730 NZ_CP068147:4268290-4268408 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
