Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4607358..4607503 | Replicon | chromosome |
| Accession | NZ_CP068139 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1076 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4607394..4607496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4607358..4607503 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I33_RS22135 | 4602488..4604548 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| I6I33_RS22140 | 4604552..4605211 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| I6I33_RS22145 | 4605290..4605520 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6I33_RS22150 | 4605633..4606007 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| I6I33_RS22155 | 4606011..4606880 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| I6I33_RS22160 | 4606897..4607235 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4607358..4607503 | - | 146 | - | - | Antitoxin |
| - | 4607394..4607496 | + | 103 | - | - | Toxin |
| I6I33_RS22165 | 4607871..4608014 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6I33_RS22170 | 4608119..4609087 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| I6I33_RS22175 | 4609244..4609897 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| I6I33_RS22180 | 4609894..4610085 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6I33_RS22185 | 4610183..4610422 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6I33_RS22190 | 4610538..4611971 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T186668 NZ_CP068139:4607394-4607496 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT186668 NZ_CP068139:c4607503-4607358 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
