Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5085706..5085854 | Replicon | chromosome |
| Accession | NZ_CP068096 | ||
| Organism | Serratia plymuthica strain FDAARGOS_1138 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5085714..5085810 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5085706..5085854 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I95_RS23725 | 5080925..5081038 | - | 114 | Protein_4629 | IS1 family transposase | - |
| I6I95_RS23730 | 5081254..5083206 | + | 1953 | WP_006324744.1 | TonB-dependent receptor | - |
| I6I95_RS23735 | 5083203..5084567 | - | 1365 | WP_020438854.1 | HAMP domain-containing protein | - |
| I6I95_RS23740 | 5084564..5085313 | - | 750 | WP_037430657.1 | response regulator transcription factor | - |
| - | 5085706..5085854 | + | 149 | - | - | Antitoxin |
| - | 5085714..5085810 | - | 97 | - | - | Toxin |
| I6I95_RS23745 | 5085952..5086293 | - | 342 | WP_004943126.1 | YebY family protein | - |
| I6I95_RS23750 | 5086363..5087244 | - | 882 | WP_006324741.1 | copper homeostasis membrane protein CopD | - |
| I6I95_RS23755 | 5087248..5087631 | - | 384 | WP_004943122.1 | CopC domain-containing protein YobA | - |
| I6I95_RS23760 | 5087937..5088455 | - | 519 | WP_004943119.1 | non-heme ferritin | - |
| I6I95_RS23765 | 5088830..5089060 | + | 231 | WP_004943118.1 | DNA polymerase III subunit theta | - |
| I6I95_RS23770 | 5089091..5090044 | - | 954 | WP_006324738.1 | prolyl aminopeptidase | - |
| I6I95_RS23775 | 5090213..5090638 | - | 426 | WP_004943113.1 | TraR/DksA C4-type zinc finger protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T186628 NZ_CP068096:c5085810-5085714 [Serratia plymuthica]
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT186628 NZ_CP068096:5085706-5085854 [Serratia plymuthica]
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
AACAGCATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTTTGTGCAGGGCTTGTTCAGCCATGCACTTTAAGAGTAGCTTACCGCGCTAGTTTTGCCAG
