Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 248185..248707 Replicon chromosome
Accession NZ_CP068050
Organism Burkholderia gladioli strain BBB-01

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag JKG63_RS19760 Protein ID WP_046580640.1
Coordinates 248414..248707 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag JKG63_RS19755 Protein ID WP_046580639.1
Coordinates 248185..248427 (+) Length 81 a.a.

Genomic Context

JKG63_RS19755JKG63_RS19760JKG63_RS19775JKG63_RS19735JKG63_RS19740JKG63_RS19745JKG63_RS19750JKG63_RS19765JKG63_RS19770
Location: 248185..248427 (243 bp)
Type: Antitoxin
Protein ID: WP_046580639.1
Location: 248414..248707 (294 bp)
Type: Toxin
Protein ID: WP_046580640.1
Location: 252925..253632 (708 bp)
Type: Others
Protein ID: WP_017921518.1
Location: 243262..244974 (1713 bp)
Type: Others
Protein ID: WP_201446910.1
Location: 244974..245939 (966 bp)
Type: Others
Protein ID: WP_186013410.1
Location: 245941..246636 (696 bp)
Type: Others
Protein ID: WP_186028802.1
Location: 246647..247795 (1149 bp)
Type: Others
Protein ID: WP_186258195.1
Location: 248772..249686 (915 bp)
Type: Others
Protein ID: WP_017921191.1
Location: 249883..252450 (2568 bp)
Type: Others
Protein ID: WP_186099357.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
JKG63_RS19735243262..244974-1713WP_201446910.1ABC transporter permease subunit-
JKG63_RS19740244974..245939-966WP_186013410.1ABC transporter substrate-binding protein-
JKG63_RS19745245941..246636-696WP_186028802.1ABC transporter ATP-binding protein-
JKG63_RS19750246647..247795-1149WP_186258195.1porin-
JKG63_RS19755248185..248427+243WP_046580639.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
JKG63_RS19760248414..248707+294WP_046580640.1type II toxin-antitoxin system RelE/ParE family toxinToxin
JKG63_RS19765248772..249686-915WP_017921191.1glutaminase-
JKG63_RS19770249883..252450-2568WP_186099357.1TonB-dependent siderophore receptor-
JKG63_RS19775252925..253632+708WP_017921518.1response regulator-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-70)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11557.54 Da        Isoelectric Point: 10.2570

>T186564 WP_046580640.1 NZ_CP068050:248414-248707 [Burkholderia gladioli]
MKTYELQFLEEALKEWHRLDRTVREQFKKKLRERLEFPRVESARLHAMTDCYKIKLLSLGYRLVYQVEDSVITVTVIAVG
KRERGAAYEAALARLKR

Download         Length: 294 bp

>T186564 NZ_CP089604:c23345-22995 [Vibrio furnissii]
ATGTGGGTCATCGAGACAACCGACACCTTTGATGAGTGGTTCGATGCTCTGGATGATACCGATAGAGCAAACGTGCTGGC
TTCGATGATGGTGCTGCGAGATAGAGGCCCCATGCTGTCGAGGCCATACGCGGATACTGTTAACGGTTCATCCTACAGCA
ACATGAAAGAGCTTCGGGTCCAAAGCAAAGGAGATCCTATCAGAGCGTTCTTTGCGTTCGATCCAAAGCGTAAGGGGATT
CTTCTCTGCGCCGGTAACAAGACCGGGGACGAGAAAAGGTTTTATGAAGTAATGATCCCAATTGCAGACCGTGAGTTTGC
GGCGCACTTGGATAAATTGAAGAAGGAGTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8624.92 Da        Isoelectric Point: 4.2558

>AT186564 WP_046580639.1 NZ_CP068050:248185-248427 [Burkholderia gladioli]
MEVILARTSIGISELKVNPTAAIEQADGPVAVLNRNRPVAYLVPADAWEAICDKLEDIELAEIVRARAGQKAVSVNLEDL

Download         Length: 243 bp

>AT186564 NZ_CP089604:c22990-22688 [Vibrio furnissii]
ATGGCAAGAACTCTTGACCAAATGCTGGCAACAGAAAAGCCTGAGGTTGTTGCCAAAGCACAGAAAGCGGCCACTGAGAT
GTTACTGAACATCCACTTGGCAGAGCTTCGTGATCGCATGAACCTTACCCAGGGGGAAATTGCTGCATCTCTGGGTGTGA
GACAGCCGACAGTCTCCGAGATGGAAAAACCTGGACGAGATCTCAAGCTGTCGTCCATTAAGCGGTACGTTGAGGCCTCC
GGTGGCAAGCTACGCCTCGATGTTGAACTTCCGGACGGCACCCACTACGGCTTTGCCGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References