Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2979623..2979857 | Replicon | chromosome |
| Accession | NZ_CP068035 | ||
| Organism | Escherichia coli strain U90 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2979624..2979727 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2979623..2979857 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKF55_RS14360 | 2976535..2977623 | + | 1089 | WP_063100796.1 | recombinase RecT | - |
| JKF55_RS14365 | 2977687..2977881 | + | 195 | WP_021500490.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| JKF55_RS14370 | 2977874..2978062 | + | 189 | WP_021529595.1 | DUF1187 family protein | - |
| - | 2977880..2978058 | - | 179 | NuclAT_1 | - | - |
| - | 2977880..2978058 | - | 179 | NuclAT_1 | - | - |
| - | 2977880..2978058 | - | 179 | NuclAT_1 | - | - |
| - | 2977880..2978058 | - | 179 | NuclAT_1 | - | - |
| JKF55_RS14375 | 2978169..2978450 | + | 282 | WP_077248935.1 | excisionase | - |
| JKF55_RS14380 | 2978416..2979492 | + | 1077 | WP_063100794.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2979623..2979857 | + | 235 | - | - | Antitoxin |
| - | 2979624..2979727 | - | 104 | - | - | Toxin |
| JKF55_RS14385 | 2979885..2980226 | - | 342 | WP_000976492.1 | YebY family protein | - |
| JKF55_RS14390 | 2980239..2981111 | - | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| JKF55_RS14395 | 2981115..2981489 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JKF55_RS14400 | 2981628..2981858 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JKF55_RS14405 | 2981960..2982616 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JKF55_RS14410 | 2982640..2983302 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2951359..2987267 | 35908 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186499 NZ_CP068035:c2979727-2979624 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT186499 NZ_CP068035:2979623-2979857 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
