Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2384300..2384571 | Replicon | chromosome |
| Accession | NZ_CP067426 | ||
| Organism | Escherichia coli O22:H8 strain 154 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2384430..2384533 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2384300..2384571 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JI426_RS11780 | 2380855..2381517 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JI426_RS11785 | 2381541..2382197 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JI426_RS11790 | 2382299..2382529 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JI426_RS11795 | 2382668..2383042 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JI426_RS11800 | 2383046..2383918 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| JI426_RS11805 | 2383931..2384272 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2384300..2384571 | - | 272 | - | - | Antitoxin |
| - | 2384430..2384533 | + | 104 | - | - | Toxin |
| JI426_RS11810 | 2384668..2385324 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JI426_RS11815 | 2385325..2385516 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JI426_RS11820 | 2385621..2385857 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JI426_RS11825 | 2385975..2387414 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186338 NZ_CP067426:2384430-2384533 [Escherichia coli O22:H8]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT186338 NZ_CP067426:c2384571-2384300 [Escherichia coli O22:H8]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
