Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992207..1992373 | Replicon | chromosome |
| Accession | NZ_CP067413 | ||
| Organism | Raoultella ornithinolytica strain TET32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992265..1992368 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992207..1992373 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJL43_RS09245 | 1987344..1989404 | + | 2061 | WP_201165687.1 | oligopeptidase B | - |
| JJL43_RS09250 | 1989410..1990069 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| JJL43_RS09255 | 1990148..1990378 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| JJL43_RS09260 | 1990505..1990879 | + | 375 | WP_004863975.1 | CopC domain-containing protein YobA | - |
| JJL43_RS09265 | 1990883..1991752 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| JJL43_RS09270 | 1991769..1992107 | + | 339 | WP_044350914.1 | YebY family protein | - |
| - | 1992207..1992373 | - | 167 | - | - | Antitoxin |
| - | 1992265..1992368 | + | 104 | - | - | Toxin |
| JJL43_RS09275 | 1992687..1992830 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| JJL43_RS09280 | 1992951..1993922 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| JJL43_RS09285 | 1994065..1994709 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| JJL43_RS09290 | 1994715..1994906 | - | 192 | WP_004863962.1 | YebW family protein | - |
| JJL43_RS09295 | 1995000..1995239 | - | 240 | WP_004863958.1 | YebV family protein | - |
| JJL43_RS09300 | 1995354..1996787 | - | 1434 | WP_032717103.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186304 NZ_CP067413:1992265-1992368 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT186304 NZ_CP067413:c1992373-1992207 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
