Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2327899..2328425 | Replicon | chromosome |
| Accession | NZ_CP067399 | ||
| Organism | Escherichia coli strain XJW9B263 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | JJF91_RS11475 | Protein ID | WP_000323025.1 |
| Coordinates | 2328138..2328425 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | JJF91_RS11470 | Protein ID | WP_000534858.1 |
| Coordinates | 2327899..2328138 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJF91_RS11440 (2323258) | 2323258..2323605 | - | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| JJF91_RS11445 (2323602) | 2323602..2324006 | - | 405 | WP_000839179.1 | transposase | - |
| JJF91_RS11450 (2324228) | 2324228..2324649 | + | 422 | Protein_2249 | hypothetical protein | - |
| JJF91_RS11455 (2325305) | 2325305..2326327 | + | 1023 | Protein_2250 | ISNCY family transposase | - |
| JJF91_RS24725 (2326448) | 2326448..2326597 | + | 150 | WP_011443592.1 | protein YdfW | - |
| JJF91_RS11460 (2327034) | 2327034..2327366 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JJF91_RS11465 (2327569) | 2327569..2327874 | - | 306 | WP_001326990.1 | protein YdfV | - |
| JJF91_RS11470 (2327899) | 2327899..2328138 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| JJF91_RS11475 (2328138) | 2328138..2328425 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| JJF91_RS11480 (2328497) | 2328497..2328652 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JJF91_RS11485 (2328869) | 2328869..2329120 | + | 252 | WP_000980994.1 | protein Rem | - |
| JJF91_RS11490 (2329187) | 2329187..2329465 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| JJF91_RS11495 (2329467) | 2329467..2330516 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| JJF91_RS11500 (2330530) | 2330530..2331000 | + | 471 | Protein_2260 | antitermination protein | - |
| JJF91_RS11505 (2331055) | 2331055..2331752 | + | 698 | WP_106423973.1 | IS1 family transposase | - |
| JJF91_RS11510 (2331766) | 2331766..2331870 | - | 105 | Protein_2262 | putative zinc-binding protein YnfU | - |
| JJF91_RS11515 (2332090) | 2332090..2332305 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JJF91_RS11520 (2332310) | 2332310..2332621 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| JJF91_RS11525 (2332618) | 2332618..2333151 | + | 534 | WP_001092971.1 | lysozyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2305596..2380271 | 74675 | |
| - | flank | IS/Tn | - | - | 2331459..2331752 | 293 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T186281 WP_000323025.1 NZ_CP067399:2328138-2328425 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T186281 NZ_CP089312:5425611-5425874 [Streptomyces sp. GQFP]
GTGAGTGAGTACCGCACTGTTTTCCGGCCCGAGGCCCAGGCCGAGCTCCGCAAGATCCCCCGTGACGCGGCGCTCCGCAT
CCTCGCCAAGCTGACGGAGCTGGAGACAGATCCGCTCGGCTTCAGCACCACGGCGCTCGTCTCCCAGCCGGAGAGACGCC
GACTGCGCGTCGGCGACTACCGCGTCATCTACACGATCGACAACGGGGAACTTGTTGTGTGGGTCGTTCACGTCGGGCAC
CGGTCCACGGTCTACGGCACCTGA
GTGAGTGAGTACCGCACTGTTTTCCGGCCCGAGGCCCAGGCCGAGCTCCGCAAGATCCCCCGTGACGCGGCGCTCCGCAT
CCTCGCCAAGCTGACGGAGCTGGAGACAGATCCGCTCGGCTTCAGCACCACGGCGCTCGTCTCCCAGCCGGAGAGACGCC
GACTGCGCGTCGGCGACTACCGCGTCATCTACACGATCGACAACGGGGAACTTGTTGTGTGGGTCGTTCACGTCGGGCAC
CGGTCCACGGTCTACGGCACCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT186281 WP_000534858.1 NZ_CP067399:2327899-2328138 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT186281 NZ_CP089312:5425313-5425579 [Streptomyces sp. GQFP]
ATGACGCAGATGCCCATAGAGTCCATCCGCGCTGTCCGTGCTCACCTGGCCGAGGTGGTCGAGCGGGCCGATCGGGACGA
CATGCCGACGGTCATCACCCGGCGGGGCAAGGAAGTGGCCGCCGTCGTGTCGATCGAGGTTCTGCGCAGGTACCAGGAGT
GGGAAGAGCGCGAGATCAACCGGATCATCGACGAGCGCATGGCGAATCGGGTCGCCGGTGTCCCGATCGAGGACGTCATG
CGGGAGACGCTGGCGCGCGGTGAATGA
ATGACGCAGATGCCCATAGAGTCCATCCGCGCTGTCCGTGCTCACCTGGCCGAGGTGGTCGAGCGGGCCGATCGGGACGA
CATGCCGACGGTCATCACCCGGCGGGGCAAGGAAGTGGCCGCCGTCGTGTCGATCGAGGTTCTGCGCAGGTACCAGGAGT
GGGAAGAGCGCGAGATCAACCGGATCATCGACGAGCGCATGGCGAATCGGGTCGCCGGTGTCCCGATCGAGGACGTCATG
CGGGAGACGCTGGCGCGCGGTGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|