Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2038933..2039204 | Replicon | chromosome |
| Accession | NZ_CP067399 | ||
| Organism | Escherichia coli strain XJW9B263 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039063..2039166 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2038933..2039204 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJF91_RS09980 | 2035488..2036150 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JJF91_RS09985 | 2036174..2036830 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJF91_RS09990 | 2036932..2037162 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJF91_RS09995 | 2037301..2037675 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JJF91_RS10000 | 2037679..2038551 | + | 873 | WP_039268383.1 | copper homeostasis membrane protein CopD | - |
| JJF91_RS10005 | 2038564..2038905 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2038933..2039204 | - | 272 | - | - | Antitoxin |
| - | 2039063..2039166 | + | 104 | - | - | Toxin |
| JJF91_RS10010 | 2039301..2039957 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JJF91_RS10015 | 2039958..2040149 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JJF91_RS10020 | 2040254..2040490 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JJF91_RS10025 | 2040608..2042047 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186273 NZ_CP067399:2039063-2039166 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT186273 NZ_CP067399:c2039204-2038933 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
