Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2393719..2394245 | Replicon | chromosome |
| Accession | NZ_CP067342 | ||
| Organism | Escherichia coli strain ECJXMCRH7 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | JJB06_RS11745 | Protein ID | WP_000323025.1 |
| Coordinates | 2393958..2394245 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | JJB06_RS11740 | Protein ID | WP_000534858.1 |
| Coordinates | 2393719..2393958 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB06_RS11720 (2389559) | 2389559..2390928 | + | 1370 | WP_168728556.1 | IS3-like element IS150 family transposase | - |
| JJB06_RS11725 (2391125) | 2391125..2392147 | + | 1023 | Protein_2299 | ISNCY family transposase | - |
| JJB06_RS24975 (2392268) | 2392268..2392417 | + | 150 | WP_011443592.1 | protein YdfW | - |
| JJB06_RS11730 (2392854) | 2392854..2393186 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JJB06_RS11735 (2393389) | 2393389..2393694 | - | 306 | WP_071598992.1 | protein YdfV | - |
| JJB06_RS11740 (2393719) | 2393719..2393958 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| JJB06_RS11745 (2393958) | 2393958..2394245 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| JJB06_RS11750 (2394317) | 2394317..2394472 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JJB06_RS11755 (2394689) | 2394689..2394940 | + | 252 | WP_000980994.1 | protein Rem | - |
| JJB06_RS11760 (2395166) | 2395166..2395327 | + | 162 | Protein_2307 | antitermination protein | - |
| JJB06_RS11765 (2395605) | 2395605..2395694 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| JJB06_RS11770 (2395749) | 2395749..2395961 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JJB06_RS11775 (2396262) | 2396262..2396477 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JJB06_RS11780 (2396841) | 2396841..2397011 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JJB06_RS11785 (2397231) | 2397231..2397446 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JJB06_RS11790 (2397451) | 2397451..2397762 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| JJB06_RS11795 (2397759) | 2397759..2398292 | + | 534 | WP_001092971.1 | lysozyme | - |
| JJB06_RS11800 (2398289) | 2398289..2398786 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | sodB / espR1 / espR1 | 2293842..2618278 | 324436 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T186141 WP_000323025.1 NZ_CP067342:2393958-2394245 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T186141 NZ_CP089225:3007552-3007968 [Nocardia gipuzkoensis]
GTGACCGATTCCGAACAGATCGTTCTGGATGCCAGCGCGATGGTCGACATCCTTGTGCGCAATGACCGCACGGCCGCTGT
GATTTCGAGGATCACGACGACAGTCATGCATGTCCCGGCGCACTTCGACGCCGAAGTCCTGTCCGCACTCGGGCGACTGA
ACCGAGCGGGCGACTTGACCGATGGCGACGTCGAGACCGCACTGAGCCGCCTCGCCCGCGCGCCACTGACCCGGCATCCG
CTTCTGAACCTGACCAAAGGCGCTTGGGCTCGTCGTGCTGCGATCAGGCTGACCGATGCGCTCTATGTCGAACTCGCCGA
ACAACTGGACATGCCGCTGATCACCACGGACGGACGCCTCGCTCGAGCATCCTCGCGTGCCGAGGGAATCCGCGCTGCGG
CGGAACTCCGCGAATAG
GTGACCGATTCCGAACAGATCGTTCTGGATGCCAGCGCGATGGTCGACATCCTTGTGCGCAATGACCGCACGGCCGCTGT
GATTTCGAGGATCACGACGACAGTCATGCATGTCCCGGCGCACTTCGACGCCGAAGTCCTGTCCGCACTCGGGCGACTGA
ACCGAGCGGGCGACTTGACCGATGGCGACGTCGAGACCGCACTGAGCCGCCTCGCCCGCGCGCCACTGACCCGGCATCCG
CTTCTGAACCTGACCAAAGGCGCTTGGGCTCGTCGTGCTGCGATCAGGCTGACCGATGCGCTCTATGTCGAACTCGCCGA
ACAACTGGACATGCCGCTGATCACCACGGACGGACGCCTCGCTCGAGCATCCTCGCGTGCCGAGGGAATCCGCGCTGCGG
CGGAACTCCGCGAATAG
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT186141 WP_000534858.1 NZ_CP067342:2393719-2393958 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT186141 NZ_CP089225:3007337-3007555 [Nocardia gipuzkoensis]
ATGACTCGGCTCAACGTTTACGTCCCCGATGAGCTGGCTGAGCGCGCCCGTGAGCGGGGGCTCAACGTGTCTGCGCTGAC
CCAGGCCGCGATTCTCGCGGCACTCGAAAAGAGCGCGACGTCGGCTTGGCTGGCTGAGTTCGACGACGACCGCCCCGAGG
TCTCGCACGAGGCCGTTCTTGCCGCCATCGATGCGGCGCGGGATGAGTTCGGCCGGTGA
ATGACTCGGCTCAACGTTTACGTCCCCGATGAGCTGGCTGAGCGCGCCCGTGAGCGGGGGCTCAACGTGTCTGCGCTGAC
CCAGGCCGCGATTCTCGCGGCACTCGAAAAGAGCGCGACGTCGGCTTGGCTGGCTGAGTTCGACGACGACCGCCCCGAGG
TCTCGCACGAGGCCGTTCTTGCCGCCATCGATGCGGCGCGGGATGAGTTCGGCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|