Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2785495..2785766 | Replicon | chromosome |
| Accession | NZ_CP067307 | ||
| Organism | Escherichia coli strain ABW_A19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2785533..2785636 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2785495..2785766 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB22_RS13050 | 2782653..2784092 | + | 1440 | WP_024248364.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJB22_RS13055 | 2784209..2784445 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JJB22_RS13060 | 2784550..2784741 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JJB22_RS13065 | 2784742..2785398 | - | 657 | WP_000812738.1 | protein-serine/threonine phosphatase | - |
| - | 2785495..2785766 | + | 272 | - | - | Antitoxin |
| - | 2785533..2785636 | - | 104 | - | - | Toxin |
| JJB22_RS13070 | 2785794..2786135 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JJB22_RS13075 | 2786148..2787020 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| JJB22_RS13080 | 2787024..2787398 | - | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| JJB22_RS13085 | 2787537..2787767 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJB22_RS13090 | 2787869..2788525 | + | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJB22_RS13095 | 2788548..2789210 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T186078 NZ_CP067307:c2785636-2785533 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT186078 NZ_CP067307:2785495-2785766 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
