Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2151252..2151778 | Replicon | chromosome |
| Accession | NZ_CP067303 | ||
| Organism | Escherichia coli strain ABW_A32 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | JJB23_RS10275 | Protein ID | WP_000323025.1 |
| Coordinates | 2151252..2151539 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | JJB23_RS10280 | Protein ID | WP_000534858.1 |
| Coordinates | 2151539..2151778 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB23_RS10230 (2146276) | 2146276..2146491 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| JJB23_RS23305 (2146711) | 2146711..2146881 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| JJB23_RS10235 (2147245) | 2147245..2147460 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| JJB23_RS10240 (2147761) | 2147761..2147973 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| JJB23_RS10245 (2148028) | 2148028..2148117 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| JJB23_RS10250 (2148395) | 2148395..2149147 | - | 753 | WP_001047135.1 | antitermination protein | - |
| JJB23_RS10255 (2149161) | 2149161..2150210 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| JJB23_RS10260 (2150212) | 2150212..2150490 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| JJB23_RS10265 (2150557) | 2150557..2150808 | - | 252 | WP_000980994.1 | protein Rem | - |
| JJB23_RS10270 (2151025) | 2151025..2151180 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| JJB23_RS10275 (2151252) | 2151252..2151539 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| JJB23_RS10280 (2151539) | 2151539..2151778 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| JJB23_RS10285 (2151803) | 2151803..2152108 | + | 306 | WP_001326990.1 | protein YdfV | - |
| JJB23_RS10295 (2153088) | 2153088..2153420 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| JJB23_RS23455 (2153857) | 2153857..2154006 | - | 150 | WP_011443592.1 | protein YdfW | - |
| JJB23_RS10300 (2154127) | 2154127..2155149 | - | 1023 | Protein_2038 | ISNCY family transposase | - |
| JJB23_RS10305 (2155939) | 2155939..2156226 | - | 288 | Protein_2039 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2136064..2167732 | 31668 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T186039 WP_000323025.1 NZ_CP067303:c2151539-2151252 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T186039 NZ_CP089159:1339452-1339640 [Staphylococcus aureus]
ATGTCTTTACATTTTGCAATTCTGTTTTGGCTAGCATTAATTTTCTTAGTTGCCGCTACGTTTATACTCGTATTAATGAA
AAAAACTAGCAAAGAATCTAAAAAAGAGTCCTATTTAAGTTTCACTGTCATTCTCTATATTTTTGGATTCGCTATATTAA
TATACACATTTATATTTGGTGTGCTATAA
ATGTCTTTACATTTTGCAATTCTGTTTTGGCTAGCATTAATTTTCTTAGTTGCCGCTACGTTTATACTCGTATTAATGAA
AAAAACTAGCAAAGAATCTAAAAAAGAGTCCTATTTAAGTTTCACTGTCATTCTCTATATTTTTGGATTCGCTATATTAA
TATACACATTTATATTTGGTGTGCTATAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT186039 WP_000534858.1 NZ_CP067303:c2151778-2151539 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT186039 NZ_CP089159:1339163-1339423 [Staphylococcus aureus]
ATGAATAACATTTTGTTAAATGCTATCAATATAGTTATTACTACCACTTTTGTTATCTTTAATATTTTAATCACATATAA
TAAAGATTTAGATGATTTATGTTGGCTCCTGCCTGGTATTATCATTTGTGGTGTGATACTCATCGTATCCTTTACCATTG
CAATGATAACTAAAAACTGGTTAAGTGAAATATTATTTTTTATAAATATCGTACTCGTTCTCTATTACATTTATCCTATT
TTTTATAGTTTTATAGGTTAA
ATGAATAACATTTTGTTAAATGCTATCAATATAGTTATTACTACCACTTTTGTTATCTTTAATATTTTAATCACATATAA
TAAAGATTTAGATGATTTATGTTGGCTCCTGCCTGGTATTATCATTTGTGGTGTGATACTCATCGTATCCTTTACCATTG
CAATGATAACTAAAAACTGGTTAAGTGAAATATTATTTTTTATAAATATCGTACTCGTTCTCTATTACATTTATCCTATT
TTTTATAGTTTTATAGGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|