Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
| Location | 111863..112413 | Replicon | plasmid pABW_S38a |
| Accession | NZ_CP067266 | ||
| Organism | Escherichia coli strain ABW_S38 | ||
Toxin (Protein)
| Gene name | ccdB | Uniprot ID | S1EZ93 |
| Locus tag | JJB13_RS22955 | Protein ID | WP_007372286.1 |
| Coordinates | 111863..112171 (-) | Length | 103 a.a. |
Antitoxin (Protein)
| Gene name | ccdA | Uniprot ID | S1FMC3 |
| Locus tag | JJB13_RS22960 | Protein ID | WP_007372285.1 |
| Coordinates | 112174..112413 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB13_RS22915 (JJB13_22910) | 107054..107758 | + | 705 | WP_001067848.1 | IS6-like element IS26 family transposase | - |
| JJB13_RS22920 (JJB13_22915) | 108327..108653 | - | 327 | WP_007372293.1 | hypothetical protein | - |
| JJB13_RS22925 (JJB13_22920) | 108737..109135 | - | 399 | WP_007372292.1 | hypothetical protein | - |
| JJB13_RS22930 (JJB13_22925) | 109146..109433 | - | 288 | WP_016241556.1 | hypothetical protein | - |
| JJB13_RS22935 (JJB13_22930) | 109735..110205 | - | 471 | WP_007372290.1 | HAD domain-containing protein | - |
| JJB13_RS22940 (JJB13_22935) | 110288..110905 | - | 618 | WP_007372289.1 | hypothetical protein | - |
| JJB13_RS22945 (JJB13_22940) | 110975..111529 | - | 555 | WP_007372288.1 | hypothetical protein | - |
| JJB13_RS22950 (JJB13_22945) | 111684..111842 | - | 159 | WP_016241558.1 | hypothetical protein | - |
| JJB13_RS22955 (JJB13_22950) | 111863..112171 | - | 309 | WP_007372286.1 | CcdB family protein | Toxin |
| JJB13_RS22960 (JJB13_22955) | 112174..112413 | - | 240 | WP_007372285.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin |
| JJB13_RS22965 (JJB13_22960) | 112552..113016 | - | 465 | WP_008786596.1 | hypothetical protein | - |
| JJB13_RS22970 (JJB13_22965) | 113013..113687 | - | 675 | WP_008786597.1 | hypothetical protein | - |
| JJB13_RS22975 (JJB13_22970) | 114145..114777 | - | 633 | WP_007372282.1 | hypothetical protein | - |
| JJB13_RS22980 (JJB13_22975) | 114793..114933 | - | 141 | WP_007372281.1 | hypothetical protein | - |
| JJB13_RS22985 (JJB13_22980) | 115081..115539 | - | 459 | WP_008786599.1 | hypothetical protein | - |
| JJB13_RS22990 (JJB13_22985) | 115592..115789 | - | 198 | WP_032155220.1 | Lar family restriction alleviation protein | - |
| JJB13_RS22995 (JJB13_22990) | 115812..116507 | - | 696 | WP_007372278.1 | hypothetical protein | - |
| JJB13_RS23000 (JJB13_22995) | 116638..116829 | - | 192 | WP_016241560.1 | hypothetical protein | - |
| JJB13_RS23005 (JJB13_23000) | 117011..117406 | - | 396 | WP_024196081.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | - | 1..303836 | 303836 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 a.a. Molecular weight: 11351.17 Da Isoelectric Point: 8.5044
>T185997 WP_007372286.1 NZ_CP067266:c112171-111863 [Escherichia coli]
MQYTVYRNPGNSQAYPYLLDIQSDIIGELNTRLVIPLHRLKKGASAPVARLTPVIQVEGNDVILMTHEMASVRVKQLGQA
VMDASPFRHTIKSAVDFLLDGF
MQYTVYRNPGNSQAYPYLLDIQSDIIGELNTRLVIPLHRLKKGASAPVARLTPVIQVEGNDVILMTHEMASVRVKQLGQA
VMDASPFRHTIKSAVDFLLDGF
Download Length: 309 bp
>T185997 NZ_CP089142:755888-756271 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATTCTCCGGGCTCGCCGGGCAACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCAGGAGTCGAAACGATGCAACTGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCACGCCCGTCTCCGGTTGAAATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCCGATGAACGTGTGATTGAGCAGCATATTG
AAGCTGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTTGAAAAATACGCACTGGTACGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGTATTGATATTCTCCGGGCTCGCCGGGCAACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCAGGAGTCGAAACGATGCAACTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 8784.97 Da Isoelectric Point: 8.6387
>AT185997 WP_007372285.1 NZ_CP067266:c112413-112174 [Escherichia coli]
MQATAARQKKTVSVTLEPMLVQQAKDAGINLSATLAEALQSKLKASAAEEWKRQNRAGIQELNRITEEHGLLSDEYRTF
MQATAARQKKTVSVTLEPMLVQQAKDAGINLSATLAEALQSKLKASAAEEWKRQNRAGIQELNRITEEHGLLSDEYRTF
Download Length: 240 bp
>AT185997 NZ_CP089142:755430-755798 [Escherichia coli]
GTGTCAGACACATTCTCCGGGACAACGCATCCCGATGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGTACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTACAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGATGCGGATGCGAACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCAGT
GAACTGAATCCCCACCGTCAGAATACCGTCACGCTGTATGTTAAAGGGCTGACCTGCCATGCGGACACCCTCGGCAGCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
GTGTCAGACACATTCTCCGGGACAACGCATCCCGATGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGTACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTACAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGATGCGGATGCGAACCATCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCAGT
GAACTGAATCCCCACCGTCAGAATACCGTCACGCTGTATGTTAAAGGGCTGACCTGCCATGCGGACACCCTCGGCAGCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|