Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966554..1966698 | Replicon | chromosome |
| Accession | NZ_CP067261 | ||
| Organism | Klebsiella variicola strain E25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966590..1966692 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966554..1966698 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB14_RS09575 (JJB14_09575) | 1961684..1963744 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| JJB14_RS09580 (JJB14_09580) | 1963748..1964407 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| JJB14_RS09585 (JJB14_09585) | 1964486..1964716 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| JJB14_RS09590 (JJB14_09590) | 1964830..1965204 | + | 375 | WP_208777824.1 | CopC domain-containing protein YobA | - |
| JJB14_RS09595 (JJB14_09595) | 1965208..1966077 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| JJB14_RS09600 (JJB14_09600) | 1966094..1966432 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1966554..1966698 | - | 145 | - | - | Antitoxin |
| - | 1966590..1966692 | + | 103 | - | - | Toxin |
| JJB14_RS09605 (JJB14_09605) | 1967077..1967220 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| JJB14_RS09610 (JJB14_09610) | 1967324..1968313 | - | 990 | WP_032691211.1 | VirK/YbjX family protein | - |
| JJB14_RS09615 (JJB14_09615) | 1968449..1969102 | + | 654 | WP_022066249.1 | protein-serine/threonine phosphatase | - |
| JJB14_RS09620 (JJB14_09620) | 1969099..1969290 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JJB14_RS09625 (JJB14_09625) | 1969388..1969627 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JJB14_RS09630 (JJB14_09630) | 1969743..1971176 | - | 1434 | WP_077139314.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T185961 NZ_CP067261:1966590-1966692 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT185961 NZ_CP067261:c1966698-1966554 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
