Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2605543..2605814 | Replicon | chromosome |
| Accession | NZ_CP067250 | ||
| Organism | Escherichia coli strain ESBL_DR28 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2605581..2605684 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2605543..2605814 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB16_RS12340 | 2602700..2604139 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JJB16_RS12345 | 2604257..2604493 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JJB16_RS12350 | 2604598..2604789 | + | 192 | WP_000457842.1 | YebW family protein | - |
| JJB16_RS12355 | 2604790..2605446 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2605543..2605814 | + | 272 | - | - | Antitoxin |
| - | 2605581..2605684 | - | 104 | - | - | Toxin |
| JJB16_RS12360 | 2605842..2606183 | - | 342 | WP_000976476.1 | YebY family protein | - |
| JJB16_RS12365 | 2606196..2607068 | - | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| JJB16_RS12370 | 2607072..2607446 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JJB16_RS12375 | 2607585..2607815 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJB16_RS12380 | 2607917..2608573 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJB16_RS12385 | 2608597..2609259 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185911 NZ_CP067250:c2605684-2605581 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185911 NZ_CP067250:2605543-2605814 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
