Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 312165..312436 | Replicon | chromosome |
| Accession | NZ_CP067245 | ||
| Organism | Escherichia coli strain OW1E2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 312295..312398 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 312165..312436 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB17_RS01540 | 308720..309382 | - | 663 | WP_208789867.1 | exodeoxyribonuclease X | - |
| JJB17_RS01545 | 309406..310062 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJB17_RS01550 | 310164..310394 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJB17_RS01555 | 310533..310907 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JJB17_RS01560 | 310911..311783 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| JJB17_RS01565 | 311796..312137 | + | 342 | WP_072145846.1 | YebY family protein | - |
| - | 312165..312436 | - | 272 | - | - | Antitoxin |
| - | 312295..312398 | + | 104 | - | - | Toxin |
| JJB17_RS01570 | 312533..313189 | + | 657 | WP_061344299.1 | protein-serine/threonine phosphatase | - |
| JJB17_RS01575 | 313190..313381 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JJB17_RS01580 | 313486..313722 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JJB17_RS01585 | 313840..315279 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185878 NZ_CP067245:312295-312398 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185878 NZ_CP067245:c312436-312165 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
