Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 377324..377595 | Replicon | chromosome |
| Accession | NZ_CP067235 | ||
| Organism | Escherichia coli strain SBF22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 377455..377557 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 377324..377595 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB19_RS01940 | 373879..374541 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JJB19_RS01945 | 374565..375221 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJB19_RS01950 | 375323..375553 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJB19_RS01955 | 375692..376066 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| JJB19_RS01960 | 376070..376942 | + | 873 | WP_000879322.1 | copper homeostasis membrane protein CopD | - |
| JJB19_RS01965 | 376955..377296 | + | 342 | WP_000976474.1 | YebY family protein | - |
| - | 377324..377595 | - | 272 | - | - | Antitoxin |
| - | 377455..377557 | + | 103 | - | - | Toxin |
| JJB19_RS01970 | 377692..378348 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| JJB19_RS01975 | 378349..378540 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JJB19_RS01980 | 378645..378881 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JJB19_RS01985 | 378999..380438 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T185812 NZ_CP067235:377455-377557 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185812 NZ_CP067235:c377595-377324 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGATTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
