Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3655616..3655887 | Replicon | chromosome |
| Accession | NZ_CP067232 | ||
| Organism | Escherichia coli strain SBF45 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3655746..3655849 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3655616..3655887 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB20_RS17320 | 3652171..3652833 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JJB20_RS17325 | 3652857..3653513 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JJB20_RS17330 | 3653615..3653845 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JJB20_RS17335 | 3653984..3654358 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JJB20_RS17340 | 3654362..3655234 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| JJB20_RS17345 | 3655247..3655588 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3655616..3655887 | - | 272 | - | - | Antitoxin |
| - | 3655746..3655849 | + | 104 | - | - | Toxin |
| JJB20_RS17350 | 3655984..3656640 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JJB20_RS17355 | 3656641..3656832 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JJB20_RS17360 | 3656937..3657173 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JJB20_RS17365 | 3657291..3658730 | - | 1440 | WP_001367453.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185795 NZ_CP067232:3655746-3655849 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185795 NZ_CP067232:c3655887-3655616 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
