Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3022333..3022501 | Replicon | chromosome |
| Accession | NZ_CP067093 | ||
| Organism | Klebsiella michiganensis strain B106 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3022391..3022494 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3022333..3022501 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMZ21_RS14230 | 3017459..3019519 | + | 2061 | WP_032741886.1 | oligopeptidase B | - |
| IMZ21_RS14235 | 3019526..3020185 | - | 660 | WP_004122030.1 | exodeoxyribonuclease X | - |
| IMZ21_RS14240 | 3020264..3020494 | - | 231 | WP_004122029.1 | DNA polymerase III subunit theta | - |
| IMZ21_RS14245 | 3020630..3021004 | + | 375 | WP_123829166.1 | CopC domain-containing protein YobA | - |
| IMZ21_RS14250 | 3021009..3021878 | + | 870 | WP_087828997.1 | copper homeostasis membrane protein CopD | - |
| IMZ21_RS14255 | 3021895..3022233 | + | 339 | WP_004122026.1 | YebY family protein | - |
| - | 3022333..3022501 | - | 169 | - | - | Antitoxin |
| - | 3022391..3022494 | + | 104 | - | - | Toxin |
| IMZ21_RS14260 | 3022619..3023578 | - | 960 | WP_123829167.1 | spore coat U domain-containing protein | - |
| IMZ21_RS14265 | 3023593..3025923 | - | 2331 | WP_200482946.1 | fimbria/pilus outer membrane usher protein | - |
| IMZ21_RS14270 | 3025926..3026690 | - | 765 | WP_123829169.1 | molecular chaperone | - |
| IMZ21_RS14275 | 3026709..3027227 | - | 519 | WP_004122022.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185738 NZ_CP067093:3022391-3022494 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT185738 NZ_CP067093:c3022501-3022333 [Klebsiella michiganensis]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
