Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1905572..1905661 | Replicon | chromosome |
| Accession | NZ_CP067057 | ||
| Organism | Rahnella aceris strain ZF458 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1905572..1905661 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1905572..1905661 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHW33_RS08580 | 1900895..1901194 | + | 300 | WP_013578212.1 | hypothetical protein | - |
| JHW33_RS08585 | 1901214..1903583 | + | 2370 | WP_200226882.1 | hypothetical protein | - |
| JHW33_RS08590 | 1903580..1904083 | + | 504 | WP_200226884.1 | siphovirus Gp157 family protein | - |
| JHW33_RS08595 | 1904161..1904436 | + | 276 | WP_200226887.1 | excisionase | - |
| JHW33_RS08600 | 1904411..1905493 | + | 1083 | WP_200226889.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1905572..1905661 | - | 90 | - | - | Toxin |
| JHW33_RS08605 | 1905817..1906152 | - | 336 | WP_013576173.1 | YebY family protein | - |
| JHW33_RS08610 | 1906204..1907088 | - | 885 | WP_200226891.1 | copper homeostasis membrane protein CopD | - |
| JHW33_RS08615 | 1907092..1907475 | - | 384 | WP_013576175.1 | copper homeostasis periplasmic binding protein CopC | - |
| JHW33_RS08620 | 1907617..1908123 | - | 507 | WP_013576176.1 | non-heme ferritin | - |
| JHW33_RS08625 | 1908530..1908760 | + | 231 | WP_013576177.1 | DNA polymerase III subunit theta | - |
| JHW33_RS08630 | 1908780..1909736 | - | 957 | WP_134705887.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1858763..1908760 | 49997 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T185636 NZ_CP067057:c1905661-1905572 [Rahnella aceris]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT
Antitoxin
Download Length: 90 bp
>AT185636 NZ_CP067057:1905572-1905661 [Rahnella aceris]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
