Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/StbC(antitoxin) |
Location | 4920299..4920705 | Replicon | chromosome |
Accession | NZ_CP066945 | ||
Organism | Xanthomonas campestris pv. campestris strain 08284 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | JH306_RS21370 | Protein ID | WP_274376545.1 |
Coordinates | 4920550..4920705 (+) | Length | 52 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | JH306_RS21365 | Protein ID | WP_274376544.1 |
Coordinates | 4920299..4920553 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JH306_RS21340 (JH306_21265) | 4915801..4916640 | + | 840 | WP_014509612.1 | SDR family oxidoreductase | - |
JH306_RS21345 (JH306_21270) | 4916784..4918049 | + | 1266 | WP_040942139.1 | phospholipase D-like domain-containing protein | - |
JH306_RS21350 (JH306_21275) | 4918081..4918596 | - | 516 | WP_040942140.1 | hypothetical protein | - |
JH306_RS21355 (JH306_21280) | 4918853..4919059 | + | 207 | WP_014509615.1 | hypothetical protein | - |
JH306_RS21360 (JH306_21285) | 4919046..4920161 | + | 1116 | WP_012439694.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
JH306_RS21365 (JH306_21290) | 4920299..4920553 | + | 255 | WP_274376544.1 | Arc family DNA-binding protein | Antitoxin |
JH306_RS21370 (JH306_21295) | 4920550..4920705 | + | 156 | WP_274376545.1 | hypothetical protein | Toxin |
JH306_RS21375 (JH306_21300) | 4920762..4921730 | - | 969 | WP_274376546.1 | DUF2971 domain-containing protein | - |
JH306_RS21385 (JH306_21310) | 4923077..4924543 | + | 1467 | Protein_4126 | alpha/beta hydrolase-fold protein | - |
JH306_RS21390 (JH306_21315) | 4925267..4925668 | - | 402 | WP_016945062.1 | DUF2384 domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 52 a.a. Molecular weight: 5653.58 Da Isoelectric Point: 4.3220
>T185482 WP_274376545.1 NZ_CP066945:4920550-4920705 [Xanthomonas campestris pv. campestris]
VTLLDTNVIFGPNLHVVAWIDAQAVETLFLSVVTVAELRSGDIQDFRPLMK
VTLLDTNVIFGPNLHVVAWIDAQAVETLFLSVVTVAELRSGDIQDFRPLMK
Download Length: 156 bp
>T185482 NZ_CP088265:1474995-1475363 [Leclercia sp. G3L]
ATGACCCTGCAATTTATCTCAGCGGAAGAGATAGTCCTGTTTCATGACAAACTCCTCAGCGTCACGCCTGGCGTCGCGGG
AATGTCGGATCCGGGTCGTGCTGAAGCGCTGCTCTATCGCGTGTTAAACAAATATCAATACGAAGGGGTGACCGATGTCT
GGATCCTGGCGGCGATGCATTTGCTGGCCATCTCCCGCGGCCATATCTTCAATGATGGTAATAAACGCACGGCATTGTTT
ATCACCTTGCTTTTCCTCAAACGTAACGGCATTTCGCTGAAGGCCAATCCGGATTATGTGGCGATGACGGTTGAGGCTGC
TGCGGGCCGTCTGTCGCTTGAAGAAATTGTGGAGCGTTTACGCCGCTAG
ATGACCCTGCAATTTATCTCAGCGGAAGAGATAGTCCTGTTTCATGACAAACTCCTCAGCGTCACGCCTGGCGTCGCGGG
AATGTCGGATCCGGGTCGTGCTGAAGCGCTGCTCTATCGCGTGTTAAACAAATATCAATACGAAGGGGTGACCGATGTCT
GGATCCTGGCGGCGATGCATTTGCTGGCCATCTCCCGCGGCCATATCTTCAATGATGGTAATAAACGCACGGCATTGTTT
ATCACCTTGCTTTTCCTCAAACGTAACGGCATTTCGCTGAAGGCCAATCCGGATTATGTGGCGATGACGGTTGAGGCTGC
TGCGGGCCGTCTGTCGCTTGAAGAAATTGTGGAGCGTTTACGCCGCTAG
Antitoxin
Download Length: 85 a.a. Molecular weight: 8940.38 Da Isoelectric Point: 10.8780
>AT185482 WP_274376544.1 NZ_CP066945:4920299-4920553 [Xanthomonas campestris pv. campestris]
MPSFTVRNIPEDVHRAIRARAAQHGRSTEAEIRAILESAAKPAGQVKLGALLVDIGRDAGLTAKEADAFAKLRDKAAIKP
IGLK
MPSFTVRNIPEDVHRAIRARAAQHGRSTEAEIRAILESAAKPAGQVKLGALLVDIGRDAGLTAKEADAFAKLRDKAAIKP
IGLK
Download Length: 255 bp
>AT185482 NZ_CP088265:1474777-1474998 [Leclercia sp. G3L]
ATGCGTACAATGAACTATAGCGAAGCACGTCAGAATCTTGCCTCAGCGCTGGATTCTGCCGCGACGGGAACACCCGTCAC
CATCACGCGTCGCGGTCATAAACCTGCCGTGATTATCAGCGCAGAAGAATTTGAACGTTATCAGGTGGCAAAACTGGATG
CCGAGTTTGACGCCATTATGGGTATTCATGGCAACGAAATTAGGGAACTGGCTGACAAATGA
ATGCGTACAATGAACTATAGCGAAGCACGTCAGAATCTTGCCTCAGCGCTGGATTCTGCCGCGACGGGAACACCCGTCAC
CATCACGCGTCGCGGTCATAAACCTGCCGTGATTATCAGCGCAGAAGAATTTGAACGTTATCAGGTGGCAAAACTGGATG
CCGAGTTTGACGCCATTATGGGTATTCATGGCAACGAAATTAGGGAACTGGCTGACAAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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