Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tacAT/DUF1778(antitoxin) |
Location | 1323848..1324626 | Replicon | chromosome |
Accession | NZ_CP066934 | ||
Organism | Xanthomonas campestris pv. campestris strain 08290 |
Toxin (Protein)
Gene name | TacT2 | Uniprot ID | Q8P667 |
Locus tag | JH256_RS05615 | Protein ID | WP_011038220.1 |
Coordinates | 1323848..1324339 (-) | Length | 164 a.a. |
Antitoxin (Protein)
Gene name | TacA2 | Uniprot ID | Q8P668 |
Locus tag | JH256_RS05620 | Protein ID | WP_011038219.1 |
Coordinates | 1324336..1324626 (-) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JH256_RS05600 (JH256_05565) | 1320176..1321051 | + | 876 | WP_016945000.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
JH256_RS05605 (JH256_05570) | 1321701..1322378 | + | 678 | WP_003490678.1 | response regulator transcription factor | - |
JH256_RS05610 (JH256_05575) | 1322371..1323705 | + | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
JH256_RS05615 (JH256_05580) | 1323848..1324339 | - | 492 | WP_011038220.1 | GNAT family N-acetyltransferase | Toxin |
JH256_RS05620 (JH256_05585) | 1324336..1324626 | - | 291 | WP_011038219.1 | DUF1778 domain-containing protein | Antitoxin |
JH256_RS05625 (JH256_05590) | 1324701..1325102 | - | 402 | WP_019237348.1 | SymE family type I addiction module toxin | - |
JH256_RS05630 (JH256_05595) | 1325634..1326257 | - | 624 | WP_011038217.1 | dephospho-CoA kinase | - |
JH256_RS05635 (JH256_05600) | 1326271..1327134 | - | 864 | WP_011038216.1 | A24 family peptidase | - |
JH256_RS05640 (JH256_05605) | 1327141..1328397 | - | 1257 | WP_011038215.1 | type II secretion system F family protein | - |
JH256_RS05645 (JH256_05610) | 1328724..1329164 | + | 441 | WP_011038214.1 | pilin | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 1119753..1387169 | 267416 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 164 a.a. Molecular weight: 17638.31 Da Isoelectric Point: 8.1192
>T185468 WP_011038220.1 NZ_CP066934:c1324339-1323848 [Xanthomonas campestris pv. campestris]
MTVSAPEPLTAHHRVEPFASGVESLDHWLKRRALKNQATGASRTFVACEDDRVVAYYALASSAVAVDATPGRFRRNMPDP
IPVVVLGRLAVDQSLHGRGFGRALMQDAGKRILHAADTIGIRGLLVHALSADAKAFYERIGFEPSPLDPMVLVVTLEDLK
ASL
MTVSAPEPLTAHHRVEPFASGVESLDHWLKRRALKNQATGASRTFVACEDDRVVAYYALASSAVAVDATPGRFRRNMPDP
IPVVVLGRLAVDQSLHGRGFGRALMQDAGKRILHAADTIGIRGLLVHALSADAKAFYERIGFEPSPLDPMVLVVTLEDLK
ASL
Download Length: 492 bp
>T185468 NZ_CP088247:221465-221968 [Methylorubrum sp. B1-46]
GTGCCCCTATCGGCTCCCGAACCGATCACGGCCGCGCATGACGTCTCACAATTCTCCTGCGGCAAGCCGACGCTCGATCA
CTGGCTGAAAACCCGCGCCCTGTCGAACCAGACGAAGGGCTTTACCGCCGTTCTCGTGGTGCATGAGGCCGGGCGGGTTG
TCGGCTATTACGGTCTGGCGCCGACGGCGGTGGTGCCCGCCGTTCTGCCGCGCGCGGTCCGCACCGGACAGCCGCCCGAT
CCGGTTCCCTGTCTGCTTCTCGGCCAGCTCGCCACGGACGAAGCTTGGGTGGGGCAAGGGATAGGCACCGGTCTCGTCAA
ACATGCGCTCCAGCGCTGCGTGCAAGCAGCCAGCCTGGTCGGCGGACGGGCCTTGATGGTGAATGCCATCGATGACGACG
CTGCACAGTTCTGGCAGCGGCGCGGCTTTTTGCCGACGCACGATGATCCGCTCGTTCTCTTCCGGTCCATCGCGGCGATC
GCTGCCTCGCTGACGCAGGCGTAA
GTGCCCCTATCGGCTCCCGAACCGATCACGGCCGCGCATGACGTCTCACAATTCTCCTGCGGCAAGCCGACGCTCGATCA
CTGGCTGAAAACCCGCGCCCTGTCGAACCAGACGAAGGGCTTTACCGCCGTTCTCGTGGTGCATGAGGCCGGGCGGGTTG
TCGGCTATTACGGTCTGGCGCCGACGGCGGTGGTGCCCGCCGTTCTGCCGCGCGCGGTCCGCACCGGACAGCCGCCCGAT
CCGGTTCCCTGTCTGCTTCTCGGCCAGCTCGCCACGGACGAAGCTTGGGTGGGGCAAGGGATAGGCACCGGTCTCGTCAA
ACATGCGCTCCAGCGCTGCGTGCAAGCAGCCAGCCTGGTCGGCGGACGGGCCTTGATGGTGAATGCCATCGATGACGACG
CTGCACAGTTCTGGCAGCGGCGCGGCTTTTTGCCGACGCACGATGATCCGCTCGTTCTCTTCCGGTCCATCGCGGCGATC
GCTGCCTCGCTGACGCAGGCGTAA
Antitoxin
Download Length: 97 a.a. Molecular weight: 10678.23 Da Isoelectric Point: 10.5480
>AT185468 WP_011038219.1 NZ_CP066934:c1324626-1324336 [Xanthomonas campestris pv. campestris]
MSTPNTTPGKRETLNLRIKPEERSLIDRAAKARGKNRTDFMLDAARSAAEEALLDQTLITASPDAYAAFLARLDMPPQPN
ARLRKTMQTPAPWEKA
MSTPNTTPGKRETLNLRIKPEERSLIDRAAKARGKNRTDFMLDAARSAAEEALLDQTLITASPDAYAAFLARLDMPPQPN
ARLRKTMQTPAPWEKA
Download Length: 291 bp
>AT185468 NZ_CP088247:221162-221461 [Methylorubrum sp. B1-46]
ATGGCCAGCACAGCAGAACGCAAGGAATATCCCATCTCGATGCGATTGCCGGAGTCGGATGTCGCGATGATCGATCGAGC
GGCCACGCTGCGGGGTCGCTCGCGCACCGACTTCGTGCGCGACGCCGCCGTGCGCGCTGCCGAGGAAGTGGTCATGGAAC
AAAGCTTCATCCGCATGAGCCCGGAAGGGTTCGCCGGGTTCATGGAGGTTCTGGCCGCCCCCGCAATGCCGGTCCCCGCG
ATGGTAAAGCTGGCCAAGCGTCCGGCGCCCTGGGAACCCGGTTATGAACCGAAGCGGTAA
ATGGCCAGCACAGCAGAACGCAAGGAATATCCCATCTCGATGCGATTGCCGGAGTCGGATGTCGCGATGATCGATCGAGC
GGCCACGCTGCGGGGTCGCTCGCGCACCGACTTCGTGCGCGACGCCGCCGTGCGCGCTGCCGAGGAAGTGGTCATGGAAC
AAAGCTTCATCCGCATGAGCCCGGAAGGGTTCGCCGGGTTCATGGAGGTTCTGGCCGCCCCCGCAATGCCGGTCCCCGCG
ATGGTAAAGCTGGCCAAGCGTCCGGCGCCCTGGGAACCCGGTTATGAACCGAAGCGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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