Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 2609527..2610160 Replicon chromosome
Accession NZ_CP066931
Organism Xanthomonas campestris pv. raphani strain 609

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag JH270_RS11075 Protein ID WP_274340510.1
Coordinates 2609747..2610160 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag JH270_RS11070 Protein ID WP_274340509.1
Coordinates 2609527..2609760 (+) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JH270_RS11060 (JH270_11075) 2606662..2608197 + 1536 WP_274340508.1 hypothetical protein -
JH270_RS11065 (JH270_11080) 2608604..2609227 + 624 WP_228316184.1 hypothetical protein -
JH270_RS11070 (JH270_11085) 2609527..2609760 + 234 WP_274340509.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
JH270_RS11075 (JH270_11090) 2609747..2610160 + 414 WP_274340510.1 PIN domain-containing protein Toxin
JH270_RS11080 (JH270_11095) 2610184..2610552 + 369 WP_274340511.1 DUF3742 family protein -
JH270_RS11085 (JH270_11100) 2610557..2612074 - 1518 WP_274340512.1 conjugal transfer protein TraG N-terminal domain-containing protein -
JH270_RS11090 (JH270_11105) 2612462..2612860 - 399 WP_274340513.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2567596..2616999 49403


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(8-120)

Antitoxin

SpoVT-AbrB domain

(5-40)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15399.88 Da        Isoelectric Point: 6.4740

>T185463 WP_274340510.1 NZ_CP066931:2609747-2610160 [Xanthomonas campestris pv. raphani]
MIGGKAKIFLDSNVVLYLLSEDSAKADDAEKLVQRRPIISVQVLNEVTHVCVRKLKMGWGEVGQFLALVREFCKVVPLTV
DVHDRARQLAERHQLSFYDACIIAAAAIEGCQTLYTEDMRHGLIIEESLSIRNPFNT

Download         Length: 414 bp

>T185463 NZ_CP088242:c113431-113153 [Stenotrophomonas maltophilia]
ATGATCCGTTCATTCCGCTGCAAGCAGACCCGCGCCCTGTTTGAAGGAGCCTGCCCTCGCGCTTGGCGCCCGATACGACG
CGCGGCTGAACGTAAACTCCAGCTGCTCGATTCGGCACAGACGCTGGCCTTCCTGCGCAGCCCGCCCGGGAATCGTCTTG
AGGCGCTGTCAGGTGATCGGAGAGGACAATACAGCCTCCGTATCAATGATCAGTGGCGGCTCTGTTTCACCTGGACCGAC
AGCGGCGCCGATGCCGTGGAAATTGTTGACTATCACTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8719.98 Da        Isoelectric Point: 6.3548

>AT185463 WP_274340509.1 NZ_CP066931:2609527-2609760 [Xanthomonas campestris pv. raphani]
MQVAKWGNSLAVRLPASLVEALELREGDDIEIVVDEPRLFAVRKKPGSDALLERLRAFRGKLPADFRFNREEANDRG

Download         Length: 234 bp

>AT185463 NZ_CP088242:c113142-112843 [Stenotrophomonas maltophilia]
ATGAAGCGTCCCCACAACGGCATGCGCGCCATCCATCCTGGCGAGATCCTGCGCGAAGAGTTTCTGCTGCCCCTGTCGCT
GAGCGTGAATGCGCTGGCGAAGGCGCTGGATGTTCCCGCAACGCGGCTGCACGCCATCGTCCACGGTCAGCGCAGCATCT
CGGCGGACACGGCAGCGCGGTTGGCACGGCATTTCGGCGGGGATGCCGCTTCCTGGCTTGCGATGCAGGCGGCCTACGAT
CTCAAGACATTGCCAACACGCAGCGAGATCGAACGCCGCGTACAGCCTCGGGCGGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References