Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3476373..3476518 | Replicon | chromosome |
| Accession | NZ_CP066915 | ||
| Organism | Klebsiella pneumoniae strain XHKPN391 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3476380..3476482 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3476373..3476518 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JG797_RS17175 | 3471905..3473338 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JG797_RS17180 | 3473454..3473693 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JG797_RS17185 | 3473791..3473982 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JG797_RS17190 | 3473979..3474632 | - | 654 | WP_206640633.1 | protein-serine/threonine phosphatase | - |
| JG797_RS17195 | 3474789..3475757 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JG797_RS17200 | 3475862..3476005 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3476373..3476518 | + | 146 | - | - | Antitoxin |
| - | 3476380..3476482 | - | 103 | - | - | Toxin |
| JG797_RS17205 | 3476641..3476979 | - | 339 | WP_002911404.1 | YebY family protein | - |
| JG797_RS17210 | 3476996..3477865 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| JG797_RS17215 | 3477869..3478243 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JG797_RS17220 | 3478356..3478586 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JG797_RS17225 | 3478665..3479324 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JG797_RS17230 | 3479328..3481388 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T185431 NZ_CP066915:c3476482-3476380 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT185431 NZ_CP066915:3476373-3476518 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
