Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2076619..2076890 | Replicon | chromosome |
| Accession | NZ_CP066844 | ||
| Organism | Escherichia coli strain Z30 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2076749..2076852 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2076619..2076890 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHL13_RS09905 | 2073174..2073836 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JHL13_RS09910 | 2073860..2074516 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JHL13_RS09915 | 2074618..2074848 | - | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| JHL13_RS09920 | 2074987..2075361 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| JHL13_RS09925 | 2075365..2076237 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| JHL13_RS09930 | 2076250..2076591 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2076619..2076890 | - | 272 | - | - | Antitoxin |
| - | 2076749..2076852 | + | 104 | - | - | Toxin |
| JHL13_RS09935 | 2076987..2077643 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| JHL13_RS09940 | 2077644..2077835 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JHL13_RS09945 | 2077940..2078176 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JHL13_RS09950 | 2078294..2079733 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185203 NZ_CP066844:2076749-2076852 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185203 NZ_CP066844:c2076890-2076619 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
