Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2281223..2281494 | Replicon | chromosome |
| Accession | NZ_CP066839 | ||
| Organism | Escherichia coli strain Ec-RL2-1X | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2281353..2281456 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2281223..2281494 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JH656_RS11120 | 2277779..2278441 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JH656_RS11125 | 2278465..2279121 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JH656_RS11130 | 2279223..2279453 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JH656_RS11135 | 2279592..2279966 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| JH656_RS11140 | 2279970..2280842 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| JH656_RS11145 | 2280855..2281196 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2281223..2281494 | - | 272 | - | - | Antitoxin |
| - | 2281353..2281456 | + | 104 | - | - | Toxin |
| JH656_RS11150 | 2281591..2282247 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JH656_RS11155 | 2282248..2282439 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JH656_RS11160 | 2282544..2282780 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JH656_RS11165 | 2282898..2284337 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185176 NZ_CP066839:2281353-2281456 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185176 NZ_CP066839:c2281494-2281223 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
