Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2865416..2865687 | Replicon | chromosome |
| Accession | NZ_CP066806 | ||
| Organism | Escherichia coli strain TCM3e1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2865454..2865557 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2865416..2865687 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGU77_RS13695 | 2862573..2864012 | + | 1440 | WP_077902351.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JGU77_RS13700 | 2864130..2864366 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JGU77_RS13705 | 2864471..2864662 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JGU77_RS13710 | 2864663..2865319 | - | 657 | WP_000814509.1 | protein-serine/threonine phosphatase | - |
| - | 2865416..2865687 | + | 272 | - | - | Antitoxin |
| - | 2865454..2865557 | - | 104 | - | - | Toxin |
| JGU77_RS13715 | 2865715..2866056 | - | 342 | WP_000976472.1 | YebY family protein | - |
| JGU77_RS13720 | 2866069..2866941 | - | 873 | WP_075861812.1 | copper homeostasis membrane protein CopD | - |
| JGU77_RS13725 | 2866945..2867319 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JGU77_RS13730 | 2867458..2867688 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JGU77_RS13735 | 2867790..2868446 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| JGU77_RS13740 | 2868470..2869132 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T185070 NZ_CP066806:c2865557-2865454 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT185070 NZ_CP066806:2865416-2865687 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
