Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1393458..1393590 | Replicon | chromosome |
| Accession | NZ_CP066803 | ||
| Organism | Pantoea ananatis strain LCFJ-001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1393493..1393590 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1393458..1393590 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JGU81_RS06290 | 1388641..1390713 | + | 2073 | WP_078828729.1 | prolyl oligopeptidase family serine peptidase | - |
| JGU81_RS06295 | 1390697..1391368 | - | 672 | WP_014593875.1 | exodeoxyribonuclease X | - |
| JGU81_RS06300 | 1391368..1391598 | - | 231 | WP_089517302.1 | DNA polymerase III subunit theta | - |
| JGU81_RS06305 | 1391749..1392123 | + | 375 | WP_089517303.1 | copper homeostasis periplasmic binding protein CopC | - |
| JGU81_RS06310 | 1392128..1393003 | + | 876 | WP_029568848.1 | copper homeostasis membrane protein CopD | - |
| JGU81_RS06315 | 1393031..1393378 | + | 348 | WP_014593872.1 | YebY family protein | - |
| - | 1393458..1393590 | - | 133 | - | - | Antitoxin |
| - | 1393493..1393590 | + | 98 | - | - | Toxin |
| JGU81_RS06320 | 1393731..1394063 | - | 333 | Protein_1231 | chemotaxis protein | - |
| JGU81_RS06325 | 1394016..1395338 | + | 1323 | WP_105077029.1 | 6-phospho-alpha-glucosidase | - |
| JGU81_RS06330 | 1395565..1396038 | + | 474 | WP_029568844.1 | MEKHLA domain-containing protein | - |
| JGU81_RS06335 | 1396077..1397621 | - | 1545 | WP_105076947.1 | MCP four helix bundle domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T185050 NZ_CP066803:1393493-1393590 [Pantoea ananatis]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT185050 NZ_CP066803:c1393590-1393458 [Pantoea ananatis]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
