Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1259066..1259265 | Replicon | chromosome |
| Accession | NZ_CP066553 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain OSUCZKPC4-140 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1259159..1259262 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1259066..1259265 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFN83_RS06255 (JFN83_06210) | 1255603..1256265 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| JFN83_RS06260 (JFN83_06215) | 1256290..1256940 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| JFN83_RS06265 (JFN83_06220) | 1257052..1257282 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| JFN83_RS06270 (JFN83_06225) | 1257420..1257791 | + | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| JFN83_RS06275 (JFN83_06230) | 1257793..1258662 | + | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| JFN83_RS06280 (JFN83_06235) | 1258679..1259017 | + | 339 | WP_032609509.1 | YebY family protein | - |
| - | 1259066..1259265 | - | 200 | - | - | Antitoxin |
| JFN83_RS06285 (JFN83_06240) | 1259143..1259340 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1259159..1259262 | + | 104 | - | - | Toxin |
| JFN83_RS06290 (JFN83_06245) | 1259386..1260366 | - | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| JFN83_RS06295 (JFN83_06250) | 1260534..1261178 | + | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| JFN83_RS06300 (JFN83_06255) | 1261213..1261452 | - | 240 | WP_003859885.1 | YebV family protein | - |
| JFN83_RS06305 (JFN83_06260) | 1261559..1263007 | - | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1184867..1275919 | 91052 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T184666 NZ_CP066553:1259159-1259262 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT184666 NZ_CP066553:c1259265-1259066 [Enterobacter hormaechei subsp. xiangfangensis]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
