Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3037405..3037550 | Replicon | chromosome |
| Accession | NZ_CP066543 | ||
| Organism | Klebsiella pneumoniae strain BTS | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3037412..3037514 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3037405..3037550 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T75_RS15935 | 3032937..3034370 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D6T75_RS15940 | 3034486..3034725 | + | 240 | WP_002911393.1 | YebV family protein | - |
| D6T75_RS15945 | 3034823..3035014 | + | 192 | WP_002911395.1 | YebW family protein | - |
| D6T75_RS15950 | 3035011..3035664 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| D6T75_RS15955 | 3035821..3036789 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| D6T75_RS15960 | 3036894..3037037 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3037405..3037550 | + | 146 | - | - | Antitoxin |
| - | 3037412..3037514 | - | 103 | - | - | Toxin |
| D6T75_RS15965 | 3037673..3038011 | - | 339 | WP_002911404.1 | YebY family protein | - |
| D6T75_RS15970 | 3038028..3038897 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| D6T75_RS15975 | 3038901..3039275 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D6T75_RS15980 | 3039388..3039618 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D6T75_RS15985 | 3039697..3040356 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| D6T75_RS15990 | 3040360..3042420 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T184622 NZ_CP066543:c3037514-3037412 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT184622 NZ_CP066543:3037405-3037550 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
