Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3603423..3603568 | Replicon | chromosome |
| Accession | NZ_CP066534 | ||
| Organism | Klebsiella pneumoniae strain WCHKP090374 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3603430..3603532 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3603423..3603568 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H3G96_RS17770 | 3598955..3600388 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H3G96_RS17775 | 3600504..3600743 | + | 240 | WP_002911393.1 | YebV family protein | - |
| H3G96_RS17780 | 3600841..3601032 | + | 192 | WP_002911395.1 | YebW family protein | - |
| H3G96_RS17785 | 3601029..3601682 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| H3G96_RS17790 | 3601839..3602807 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| H3G96_RS17795 | 3602912..3603055 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3603423..3603568 | + | 146 | - | - | Antitoxin |
| - | 3603430..3603532 | - | 103 | - | - | Toxin |
| H3G96_RS17800 | 3603691..3604029 | - | 339 | WP_002911404.1 | YebY family protein | - |
| H3G96_RS17805 | 3604046..3604915 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| H3G96_RS17810 | 3604919..3605293 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| H3G96_RS17815 | 3605406..3605636 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H3G96_RS17820 | 3605715..3606374 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H3G96_RS17825 | 3606378..3608438 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T184596 NZ_CP066534:c3603532-3603430 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT184596 NZ_CP066534:3603423-3603568 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
